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[178756_at]

Description T01G5.6 /REP_DB=WormBase Gene ID /WP=CE12984 /TR=O18011 /GB=CAB03268.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.1
(-3)
A 		7.1
(-0.8)
A 		6.9
(-0.9)
A 		14.2
(3)
A 		11
B 5.5
(-0.5)
A 		5.7
(-0.2)
A 		3.7
(-3)
A 		8
(3)
A 		4
C 3
(-3)
A 		12
(3)
A 		9.9
(1.6)
A 		6.2
(-0.9)
A 		9
avr 3.9
(-3) 		8.3
(1.7) 		6.8
(0.1) 		9.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.1
(3)
A 		2.8
(-3)
A 		5.8
(0.4)
A 		5.7
(0.3)
A 		5.9
(0.5)
A 		6.7
(1.4)
A 		5
B 3.6
(-1.5)
A 		4.6
(0.2)
A 		4.9
(0.7)
A 		6.3
(3)
A 		2.7
(-3)
A 		2.7
(-3)
A 		4
C 5.4
(-1.6)
A 		4.6
(-2.3)
A 		10.9
(3)
A 		7.2
(-0.1)
A 		7
(-0.3)
A 		3.8
(-3)
A 		7
avr 5.7
(0.2) 		4
(-3) 		7.2
(3) 		6.4
(1.5) 		5.2
(-0.8) 		4.4
(-2.3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(-3)
A 		1.5
(-0.6)
A 		1.8
(1.2)
A 		2.1
(3)
A 		1
B 1.8
(3)
A 		1.4
(0.6)
A 		0.8
(-3)
A 		1.7
(2.4)
A 		1
C 1
(-3)
A 		3.5
(3)
A 		3.4
(2.8)
A 		1.1
(-2.8)
A 		3
avr 1.3
(-3) 		2.1
(3) 		2
(2.3) 		1.6
(-0.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.5
(0.8)
A 		1
(-3)
A 		1.3
(-0.8)
A 		1.4
(-0)
A 		1.8
(3)
A 		1.6
(1.5)
A 		1
B 1.3
(-0.4)
A 		1.5
(1.3)
A 		1.2
(-1.3)
A 		1.7
(3)
A 		1.1
(-2.1)
A 		1
(-3)
A 		1
C 2
(-0.2)
A 		1.4
(-2.6)
A 		2.8
(3)
A 		1.5
(-2.2)
A 		2.3
(1)
A 		1.3
(-3)
A 		2
avr 1.6
(0.6) 		1.3
(-3) 		1.8
(3) 		1.5
(-0.6) 		1.7
(1.8) 		1.3
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14439
Sequence Type Exemplar sequence
Representative Public ID T01G5.6 NCBI
Target Description T01G5.6 /REP_DB=WormBase Gene ID /WP=CE12984 /TR=O18011 /GB=CAB03268.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074326 NCBI Caenorhabditis elegans T01G5.6 (T01G5.6) mRNA, complete cds. 11/11 None
T01G5.6 ENSEMBL cdna:known chromosome:CEL140:V:15116367:15116678:-1 gene:T01G5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15116366-15116678(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01G5.6
Entrez Gene 187959 Entrez gene
SwissProt O18011 EMBL-EBI
WormBase CE12984 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03268 Hypothetical protein T01G5.6 [Caenorhabditis elegans] ref|NP_506727.1| T01G5.6 [Caenorhabditis elegans] 5.0E-54
blast CAB04817 Hypothetical protein T23D5.6 [Caenorhabditis elegans] ref|NP_506919.1| Seven TM Receptor family member (str-18) [Caenorhabditis elegans] 6.0E-19
blast AAC69234 Seven tm receptor protein 16 [Caenorhabditis elegans] ref|NP_503887.1| Seven TM Receptor family member (str-16) [Caenorhabditis elegans] 7.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506727.1 1 62-84
T01G5.6 1 62-84
Sequence
Target Sequence 
>C. ELEGANS:178756_AT
taccggacgggccaggagaagggagggctatacgacgtccaaaaaattacaatttaaaca
aatcacaacgcccacattttgccgattctcacctattgcctttgttgtatccgtaccata
ttttgacttggaaataagtgtgcctactggaatttttgtatcttcgtttaatctttatcc
agctctcgatgctttcattctgatgtatgttttgacagattatcgaaatgctttgaaacg
ta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGGACGGGCCAGGAGAAGGGAG 680 641 51 Antisense
GAAGGGAGGGCTATACGACGTCCAA 575 333 68 Antisense
AAACAAATCACAACGCCCACATTTT 107 129 106 Antisense
TTCTCACCTATTGCCTTTGTTGTAT 519 691 136 Antisense
TGCCTTTGTTGTATCCGTACCATAT 502 581 147 Antisense
GTATCCGTACCATATTTTGACTTGG 102 453 157 Antisense
GTGTGCCTACTGGAATTTTTGTATC 663 487 188 Antisense
TTGTATCTTCGTTTAATCTTTATCC 257 705 206 Antisense
AATCTTTATCCAGCTCTCGATGCTT 638 169 220 Antisense
GCTCTCGATGCTTTCATTCTGATGT 587 299 232 Antisense
GATTATCGAAATGCTTTGAAACGTA 194 429 268 Antisense
Sequence Source Affymetrix Proprietary Database