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[178755_s_at]

Description C25F9.5 /REP_DB=WormBase Gene ID /WP=CE17469 /TR=O62079 /GB=CAB03923.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 71      6grp_total > 80      4grp_total > 14      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 346.4
(2.6)
P 		97.4
(-3)
P 		238.2
(0.2)
P 		364.4
(3)
P 		267
B 392.1
(1.4)
P 		295.4
(-0.4)
P 		154.3
(-3)
P 		479.7
(3)
P 		325
C 333.5
(-0.1)
P 		221
(-3)
P 		240.7
(-2.5)
P 		456.2
(3)
P 		235
avr 357.3
(1) 		204.6
(-3) 		211.1
(-2.8) 		433.4
(3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 259.6
(-3)
P 		264.7
(-2.9)
P 		293.6
(-2.3)
P 		542.1
(3)
P 		345.1
(-1.2)
P 		345.8
(-1.2)
P 		283
B 208.9
(-3)
P 		309.7
(0.3)
P 		308.8
(0.3)
P 		321.1
(0.7)
P 		392.4
(3)
P 		319.2
(0.6)
P 		184
C 214.1
(-3)
P 		337.7
(-1.3)
P 		283.2
(-2)
P 		642.9
(3)
P 		324.5
(-1.5)
P 		266.3
(-2.3)
P 		429
avr 227.5
(-3) 		304
(-1.3) 		295.2
(-1.5) 		502
(3) 		354
(-0.2) 		310.4
(-1.2) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 126.1
(3)
P 		21.1
(-3)
P 		62.3
(-0.6)
P 		53.3
(-1.2)
P 		105
B 125
(3)
P 		73
(-0.5)
P 		35.8
(-3)
P 		102.2
(1.5)
P 		89
C 110.4
(3)
P 		63.5
(-3)
P 		83.9
(-0.4)
P 		76.9
(-1.3)
P 		47
avr 120.5
(3) 		52.5
(-3) 		60.7
(-2.3) 		77.5
(-0.8) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 47.8
(-3)
P 		94.1
(0.1)
P 		63.9
(-1.9)
P 		137.5
(3)
P 		104.1
(0.8)
P 		84.2
(-0.6)
P 		90
B 72.7
(-3)
P 		103.1
(-0.9)
P 		75
(-2.8)
P 		85
(-2.1)
P 		159.4
(3)
P 		119
(0.2)
P 		87
C 79.4
(-2.2)
P 		103
(0.2)
P 		72.1
(-3)
P 		129.3
(3)
P 		105
(0.5)
P 		89.1
(-1.2)
P 		57
avr 66.6
(-3) 		100.1
(0.6) 		70.3
(-2.6) 		117.3
(2.4) 		122.8
(3) 		97.4
(0.3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178755_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13703
Sequence Type Exemplar sequence
Representative Public ID C25F9.5 NCBI
Target Description C25F9.5 /REP_DB=WormBase Gene ID /WP=CE17469 /TR=O62079 /GB=CAB03923.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075376 NCBI Caenorhabditis elegans C25F9.5 (C25F9.5) mRNA, complete cds. 11/11 None
SNAP00000028314 ENSEMBL cdna:SNAP chromosome:CEL140:V:19410312:19413172:-1 11/11 None
GENEFINDER00000028327 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19405192:19413172:-1 11/11 None
C25F9.5.2 ENSEMBL cdna:known chromosome:CEL140:V:19410312:19413188:-1 gene:C25F9.5 11/11 None
C25F9.5.1 ENSEMBL cdna:known chromosome:CEL140:V:19410312:19413413:-1 gene:C25F9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028508 5/11 Cross Hyb Matching Probes None
SNAP00000028313 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19410311-19413154(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25F9.5
Entrez Gene 180272 Entrez gene
SwissProt O62079 EMBL-EBI
WormBase CE17469 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03923 Hypothetical protein C25F9.5 [Caenorhabditis elegans] ref|NP_507777.1| C25F9.5 [Caenorhabditis elegans] 0.0
blast CAD54148 Hypothetical protein M04C3.1b [Caenorhabditis elegans] emb|CAD54124.1| Hypothetical protein M04C3.1b [Caenorhabditis elegans] ref|NP_872172.1| M04C3.1b [Caenorhabditis elegans] 0.0
blast CAB07268 Hypothetical protein M04C3.1a [Caenorhabditis elegans] emb|CAB03924.1| Hypothetical protein M04C3.1a [Caenorhabditis elegans] ref|NP_507782.1| M04C3.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 1.3E-5
Pfam IPR000330 EMBL-EBI SNF2 related domain 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:178755_S_AT
gattgacttgaccgagaatgctcatattgatttaattcgcaatgtacttatcgaaaagaa
gttattgcaggacttgctacctacgtatacaccttcgtatatcatctacgactttgatgt
actcttgacgaaagcaaaaaaaatgtcggaacaggatcctcccgatatagtgattttctc
ctacctcatttggggcgcagctgttgtatgcttgagaaagttctttctcgacagattaaa
actcgagatttcgggccaaaatgcacaagaaatactcatggaaattgttgtcgactcttt
tacagacgacactggtggacgtctactcagagcctggacatttgcaaaactttgtcgcaa
gaaagcatacgctatgagccattcaaacctgctgctgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGACTTGACCGAGAATGCTCAT 553 433 1566 Antisense
GTTATTGCAGGACTTGCTACCTACG 644 447 1626 Antisense
GCTACCTACGTATACACCTTCGTAT 688 297 1641 Antisense
ACGACTTTGATGTACTCTTGACGAA 145 93 1673 Antisense
AACAGGATCCTCCCGATATAGTGAT 586 135 1715 Antisense
TATAGTGATTTTCTCCTACCTCATT 207 661 1731 Antisense
GGGCGCAGCTGTTGTATGCTTGAGA 503 491 1758 Antisense
TGGAAATTGTTGTCGACTCTTTTAC 452 547 1844 Antisense
GACTCTTTTACAGACGACACTGGTG 678 371 1858 Antisense
CACTGGTGGACGTCTACTCAGAGCC 74 199 1875 Antisense
TGAGCCATTCAAACCTGCTGCTGAG 588 569 1940 Antisense
Sequence Source Affymetrix Proprietary Database