[Home] | [Total List]

[178754_at] 7TM receptor, sre family

Description F36D1.2 /REP_DB=WormBase Gene ID /WP=CE18663 /TR=Q9XV41 /GB=CAB04306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 12      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 58
(-1.9)
P 		58.3
(-1.9)
P 		39.1
(-3)
A 		139.4
(3)
P 		100
B 49.3
(-3)
P 		62.1
(-0.1)
P 		53.8
(-2)
A 		75.7
(3)
P 		26
C 68
(-0.6)
P 		26.3
(-2.8)
A 		22.5
(-3)
A 		135.6
(3)
P 		113
avr 58.4
(-1.5) 		48.9
(-2.2) 		38.5
(-3) 		116.9
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 48.5
(2.2)
M 		52.8
(3)
A 		39.9
(0.7)
P 		18.8
(-3)
A 		50.3
(2.6)
A 		37.9
(0.4)
P 		34
B 29.9
(0.6)
P 		42.4
(3)
P 		35.1
(1.6)
A 		32.1
(1.1)
A 		23.4
(-0.6)
P 		10.5
(-3)
A 		32
C 41.1
(0.8)
P 		44.3
(1.4)
P 		20.6
(-2.9)
A 		53.4
(3)
A 		32.7
(-0.7)
A 		20.1
(-3)
A 		33
avr 39.8
(1.3) 		46.5
(3) 		31.9
(-0.7) 		34.8
(0) 		35.5
(0.2) 		22.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 21.1
(3)
P 		12.7
(-1.6)
P 		10.2
(-3)
A 		20.4
(2.6)
P 		11
B 15.7
(2.3)
P 		15.3
(1.7)
P 		12.5
(-3)
A 		16.1
(3)
P 		4
C 22.5
(2.8)
P 		7.6
(-3)
A 		7.9
(-2.9)
A 		22.9
(3)
P 		15
avr 19.8
(3) 		11.9
(-1.9) 		10.2
(-3) 		19.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.9
(-1.2)
M 		18.8
(3)
A 		8.7
(-1.3)
P 		4.8
(-3)
A 		15.2
(1.5)
A 		9.2
(-1.1)
P 		14
B 10.4
(0.8)
P 		14.1
(3)
P 		8.5
(-0.3)
A 		8.5
(-0.3)
A 		9.5
(0.3)
P 		3.9
(-3)
A 		10
C 15.3
(3)
P 		13.5
(1.9)
P 		5.2
(-3)
A 		10.7
(0.3)
A 		10.6
(0.2)
A 		6.7
(-2.1)
A 		10
avr 11.5
(0.3) 		15.5
(3) 		7.5
(-2.4) 		8
(-2.1) 		11.8
(0.5) 		6.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1960
Sequence Type Exemplar sequence
Representative Public ID F36D1.2 NCBI
Target Description F36D1.2 /REP_DB=WormBase Gene ID /WP=CE18663 /TR=Q9XV41 /GB=CAB04306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060496 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-22) (sre-22) mRNA, complete cds. 11/11 None
GENEFINDER00000013637 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11290597:11292206:-1 10/11 None
F36D1.2 ENSEMBL cdna:known chromosome:CEL140:I:11290597:11294414:-1 gene:F36D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11290527-11294345(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-22
Ensembl F36D1.2
Entrez Gene 185344 Entrez gene
SwissProt Q9XV41 EMBL-EBI
WormBase CE18663 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04306 Hypothetical protein F36D1.2 [Caenorhabditis elegans] ref|NP_492897.1| Serpentine Receptor, class E (epsilon) family member (sre-22) [Caenorhabditis elegans] 1.0E-180
blast CAB03517 Hypothetical protein ZK265.5 [Caenorhabditis elegans] ref|NP_492247.2| Serpentine Receptor, class E (epsilon) family member (sre-23) [Caenorhabditis elegans] 1.0E-125
blast CAB04306 Hypothetical protein F36D1.2 [Caenorhabditis elegans] ref|NP_492897.1| Serpentine Receptor, class E (epsilon) family member (sre-22) [Caenorhabditis elegans] 6.0E-98
blast CAB03517 Hypothetical protein ZK265.5 [Caenorhabditis elegans] ref|NP_492247.2| Serpentine Receptor, class E (epsilon) family member (sre-23) [Caenorhabditis elegans] 4.0E-62
blast CAE57070 Hypothetical protein CBG24964 [Caenorhabditis briggsae] 2.0E-60
blast CAE57070 Hypothetical protein CBG24964 [Caenorhabditis briggsae] 6.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.4E-61
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492897.1 7 15-37,50-72,112-134,147-169,174-196,237-259,274-291
F36D1.2 7 15-37,50-72,112-134,147-169,174-196,237-259,274-291
GENEFINDER00000013637 3 15-37,79-101,116-133
Sequence
Target Sequence 
>C. ELEGANS:178754_AT
gatcttcttctcccaaaacatgttcgcatgcaccatgtcagttttcaccacgacaatggg
tgccacgtttcattttataattttaacgattctaggctcgttatctggctcggcggtgat
ctatgctctagttgagtatttcaatcaacgacggctcacaaaactggaaaatgagcaccg
gactacaaactacactctgagcattcgctaccaattgaaagagaatttgaagacgttgaa
gcttatgcgccagtttttcatctcaataattgttataattattgcaatgggacttgcaaa
ttatcttccaattctattaaaattagatgaggacaccattttgaccgtccggacatatat
ggattatattttccattcaaatcccgtgttccttgtcccgactgcaattttcaccattga
acactataggaaatatgtgctgaaaaaagtaaaactcggcttgggaatgcgtcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCTTCTCCCAAAACATGTTC 511 419 468 Antisense
GTTCGCATGCACCATGTCAGTTTTC 172 443 489 Antisense
TGGGTGCCACGTTTCATTTTATAAT 216 553 524 Antisense
GGCGGTGATCTATGCTCTAGTTGAG 118 541 579 Antisense
AGTATTTCAATCAACGACGGCTCAC 443 61 602 Antisense
TACACTCTGAGCATTCGCTACCAAT 610 641 658 Antisense
AGACGTTGAAGCTTATGCGCCAGTT 126 71 698 Antisense
TGCGCCAGTTTTTCATCTCAATAAT 310 585 713 Antisense
TGAGGACACCATTTTGACCGTCCGG 510 567 795 Antisense
TCCCGACTGCAATTTTCACCATTGA 234 595 863 Antisense
AAACTCGGCTTGGGAATGCGTCACG 267 127 919 Antisense
Sequence Source Affymetrix Proprietary Database