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[178751_at]

Description C03A3.2 /REP_DB=WormBase Gene ID /WP=CE05193 /TR=Q17598 /GB=CAA97776.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 41      6grp_total > 03      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 730
1 2 3 4 range
A 1061.8
(2.4)
P 		986.6
(1.6)
P 		1116.3
(3)
P 		549.1
(-3)
P 		567
B 1049.9
(3)
P 		877.7
(0.9)
P 		982.1
(2.2)
P 		566.2
(-3)
P 		484
C 1034
(1.6)
P 		1002.6
(1.3)
P 		1206
(3)
P 		475.8
(-3)
P 		730
avr 1048.6
(2.4) 		955.6
(1.5) 		1101.5
(3) 		530.4
(-3) 		571

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 649.6
(-1.4)
P 		1015.2
(3)
P 		515
(-3)
P 		777.3
(0.1)
P 		695.9
(-0.8)
P 		546.8
(-2.6)
P 		500
B 663.1
(0.8)
P 		786.2
(3)
P 		616.3
(-0.1)
P 		738.6
(2.1)
P 		619.4
(-0)
P 		457.5
(-3)
P 		329
C 967.9
(3)
P 		791
(0.8)
P 		776.9
(0.7)
P 		652
(-0.8)
P 		766.4
(0.5)
P 		474.9
(-3)
P 		493
avr 760.2
(1.3) 		864.1
(3) 		636.1
(-0.7) 		722.6
(0.7) 		693.9
(0.2) 		493.1
(-3) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 386.6
(3)
P 		214.2
(-0.4)
P 		291.8
(1.1)
P 		80.4
(-3)
P 		306
B 334.8
(3)
P 		216.8
(-0.3)
P 		227.6
(-0)
P 		120.7
(-3)
P 		214
C 342.3
(1.6)
P 		288.2
(0.7)
P 		420.3
(3)
P 		80.2
(-3)
P 		340
avr 354.6
(3) 		239.7
(0.4) 		313.2
(2) 		93.8
(-3) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 119.8
(-2.8)
P 		361
(3)
P 		112.2
(-3)
P 		197.1
(-1)
P 		210
(-0.6)
P 		133.1
(-2.5)
P 		249
B 230.7
(1.3)
P 		261.7
(3)
P 		149.7
(-3)
P 		195.6
(-0.5)
P 		251.7
(2.5)
P 		170.6
(-1.9)
P 		112
C 358.8
(3)
P 		241.4
(-0.1)
P 		197.7
(-1.2)
P 		131.1
(-3)
P 		248
(0.1)
P 		159
(-2.3)
P 		228
avr 236.4
(0.7) 		288
(3) 		153.2
(-3) 		174.6
(-2) 		236.6
(0.7) 		154.2
(-3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16944
Sequence Type Exemplar sequence
Representative Public ID C03A3.2 NCBI
Target Description C03A3.2 /REP_DB=WormBase Gene ID /WP=CE05193 /TR=Q17598 /GB=CAA97776.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077478 NCBI Caenorhabditis elegans C03A3.2 (C03A3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041010 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11261894:11265812:1 11/11 None
SNAP00000041005 ENSEMBL cdna:SNAP chromosome:CEL140:X:11262834:11265812:1 11/11 None
C03A3.2.2 ENSEMBL cdna:known chromosome:CEL140:X:11262769:11266235:1 gene:C03A3.2 11/11 None
C03A3.2.1 ENSEMBL cdna:known chromosome:CEL140:X:11262771:11266235:1 gene:C03A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11262833-11265812(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03A3.2
Entrez Gene 181315 Entrez gene
SwissProt Q17598 EMBL-EBI
WormBase CE31404 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7854.1.S1_AT similar to CG5262-PA cfa
DROSOPHILA_2:1631273_AT dm
DROSGENOME1:155014_AT dm
CHICKEN:GGA.1928.1.S1_AT similar to hypothetical protein FLJ20255 gga
CHICKEN:GGA.6470.1.S1_AT similar to hypothetical protein FLJ20255 gga
CHICKEN:GGAAFFX.4821.1.S1_AT similar to hypothetical protein FLJ20255 gga
CHICKEN:GGAAFFX.4823.1.S1_AT similar to hypothetical protein FLJ20255 gga
HG-U133_PLUS_2:220097_S_AT hypothetical protein FLJ20255 hs
HG-U133A:220097_S_AT hypothetical protein FLJ20255 hs
HG-U133A_2:220097_S_AT hypothetical protein FLJ20255 hs
HU35KSUBA:RC_AA479076_AT hypothetical protein FLJ20255 hs
U133_X3P:G8923229_3P_S_AT hypothetical protein FLJ20255 hs
HG-U95B:47910_AT hypothetical protein FLJ20255 hs
HG-U95D:83084_AT hypothetical protein FLJ20255 hs
HG-U133_PLUS_2:244257_AT Hypothetical protein FLJ20255 hs
HG-U133B:244257_AT Hypothetical protein FLJ20255 hs
HG-U95E:68591_AT Hypothetical protein FLJ20255 hs
U133_X3P:HS.192121.0.A1_3P_AT Hypothetical protein FLJ20255 hs
MG-U74BV2:113252_AT RIKEN cDNA C630005D06 gene mm
MG-U74BV2:107024_AT RIKEN cDNA C630005D06 gene mm
MOE430B:1439039_AT RIKEN cDNA C630005D06 gene mm
MOUSE430_2:1439039_AT RIKEN cDNA C630005D06 gene mm
MU19KSUBA:TC15104_AT Premature mRNA for mFLJ00021 protein mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6865 amino acid transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5279 amino acid-polyamine transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97776 Hypothetical protein C03A3.2 [Caenorhabditis elegans] ref|NP_509879.2| C03A3.2 [Caenorhabditis elegans] 0.0
blast CAE70675 Hypothetical protein CBG17386 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509879.2 11 12-34,49-71,116-138,173-195,207-225,240-262,275-297,323-345,393-412,417-439,467-489
C03A3.2.2 11 12-34,49-71,116-138,173-195,207-225,240-262,275-297,323-345,393-412,417-439,467-489
C03A3.2.1 11 12-34,49-71,116-138,173-195,207-225,240-262,275-297,323-345,393-412,417-439,467-489
GENEFINDER00000041010 12 59-81,88-110,159-181,223-245,280-302,314-332,347-369,382-404,430-452,500-519,524-546,574-596
SNAP00000041005 11 12-34,49-71,116-138,173-195,207-225,240-262,275-297,323-345,393-412,417-439,467-489
Sequence
Target Sequence 
>C. ELEGANS:178751_AT
gatatctacactctcaactttttccatgatggcaacacatcatttatctactctatcatt
gactacttccttgccctattcccaatcatcactctcacttcaagctaccctattattgca
ctcacattgatcaataattttaatgtggtcaaagacattttgtgtccgaaagttgggcaa
gagaacgagtccctactcgaggcggacagtttggttgaagataacgatactgatgatgag
cgagaagcaagaaacgctagaaatgaggttggaaaagagaatgggatcaaattattcgtt
ttatttcagaaatcggtattcgatgtgttggttccggctcttgtgttggcacttcctact
tttttgagtttgctcacagacgatatgttgctccttgcttctattaccggaagtttccca
ggtgtcgctgttcaatttgcaattccttgccttctcgtcactgctgctcgcaaacatgcc
agatctgtgcttaacttcccggtacctcgcaaaaacaatagtccattccaaagcccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCTACACTCTCAACTTTTTCC 206 427 916 Antisense
GGCAACACATCATTTATCTACTCTA 300 535 946 Antisense
ACTCTATCATTGACTACTTCCTTGC 250 101 965 Antisense
AAGCTACCCTATTATTGCACTCACA 178 151 1017 Antisense
TATTCGATGTGTTGGTTCCGGCTCT 306 665 1232 Antisense
GGCACTTCCTACTTTTTTGAGTTTG 399 533 1263 Antisense
CAGACGATATGTTGCTCCTTGCTTC 339 205 1292 Antisense
TACCGGAAGTTTCCCAGGTGTCGCT 368 439 1320 Antisense
GTGTCGCTGTTCAATTTGCAATTCC 598 487 1337 Antisense
TGCTGCTCGCAAACATGCCAGATCT 25 583 1377 Antisense
AACAATAGTCCATTCCAAAGCCCTA 474 133 1429 Antisense
Sequence Source Affymetrix Proprietary Database