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[178749_s_at]

Description T03E6.1 /REP_DB=WormBase Gene ID /WP=CE16328 /TR=O45735 /GB=CAB07276.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 13      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 53.4
(3)
P 		34
(-2.8)
A 		34.2
(-2.8)
A 		33.4
(-3)
A 		20
B 29.3
(-2.7)
A 		28.1
(-3)
A 		32.3
(-2)
A 		53.3
(3)
P 		25
C 38.9
(-0.2)
P 		26.8
(-1.5)
A 		12.6
(-3)
A 		69.7
(3)
P 		57
avr 40.5
(0.3) 		29.6
(-2.3) 		26.4
(-3) 		52.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 31
(3)
A 		17.9
(0.3)
A 		16.9
(0.1)
A 		4.2
(-2.6)
A 		3.4
(-2.8)
A 		2.2
(-3)
A 		29
B 46.6
(3)
A 		21.6
(-0.4)
A 		25.2
(0)
P 		3.1
(-3)
A 		10.7
(-2)
A 		9.8
(-2.1)
A 		44
C 29
(2.8)
A 		23.6
(0.6)
A 		27.1
(2.1)
A 		18.9
(-1.3)
A 		14.7
(-3)
A 		29.4
(3)
A 		15
avr 35.5
(3) 		21
(-0.2) 		23.1
(0.2) 		8.7
(-3) 		9.6
(-2.8) 		13.8
(-1.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 19.4
(3)
P 		7.4
(-2)
A 		8.9
(-1.3)
A 		4.9
(-3)
A 		15
B 9.3
(0.2)
A 		6.9
(-3)
A 		7.5
(-2.2)
A 		11.4
(3)
P 		5
C 12.9
(3)
P 		7.7
(-0.7)
A 		4.4
(-3)
A 		11.8
(2.2)
P 		9
avr 13.9
(3) 		7.3
(-2.7) 		6.9
(-3) 		9.4
(-0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.7
(2.3)
A 		6.4
(3)
A 		3.7
(0.3)
A 		1.1
(-2.4)
A 		1
(-2.5)
A 		0.5
(-3)
A 		6
B 16.2
(3)
A 		7.2
(-0.5)
A 		6.1
(-0.9)
P 		0.8
(-3)
A 		4.4
(-1.6)
A 		3.7
(-1.9)
A 		15
C 10.8
(3)
A 		7.2
(-0.1)
A 		6.9
(-0.3)
A 		3.8
(-3)
A 		4.8
(-2.1)
A 		9.8
(2.1)
A 		7
avr 10.9
(3) 		6.9
(0.3) 		5.6
(-0.5) 		1.9
(-3) 		3.4
(-2) 		4.7
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178749_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12804
Sequence Type Exemplar sequence
Representative Public ID T03E6.1 NCBI
Target Description T03E6.1 /REP_DB=WormBase Gene ID /WP=CE16328 /TR=O45735 /GB=CAB07276.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074792(11), NM_074795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074792 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-151) (str-151) mRNA, complete cds. 11/11 None
NM_074795 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-150) (str-150) mRNA, complete cds. 11/11 None
SNAP00000008698 ENSEMBL cdna:SNAP chromosome:CEL140:V:16578782:16580708:1 11/11 None
SNAP00000008699 ENSEMBL cdna:SNAP chromosome:CEL140:V:16585855:16587756:1 11/11 None
GENEFINDER00000008707 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16585855:16587756:1 11/11 None
T03E6.1 ENSEMBL cdna:known chromosome:CEL140:V:16578782:16580708:1 gene:T03E6.1 11/11 None
T03E6.4 ENSEMBL cdna:known chromosome:CEL140:V:16585855:16587648:1 gene:T03E6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008706 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16578781-16580708(+) 100.0 100.0
chrV:16585854-16587756(+) 96.82 97.31
Public Domain and Genome References
Gene Title

Gene Symbol str-151
str-150
Ensembl T03E6.1
T03E6.4
Entrez Gene 188014 Entrez gene
188017 Entrez gene
SwissProt O45735 EMBL-EBI
O45737 EMBL-EBI
WormBase CE16328 Wormbase
CE16330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07276 Hypothetical protein T03E6.1 [Caenorhabditis elegans] ref|NP_507193.1| Seven TM Receptor family member (str-151) [Caenorhabditis elegans] 0.0
blast CAB07278 Hypothetical protein T03E6.4 [Caenorhabditis elegans] ref|NP_507196.1| Seven TM Receptor family member (str-150) [Caenorhabditis elegans] 1.0E-179
blast CAB07278 Hypothetical protein T03E6.4 [Caenorhabditis elegans] ref|NP_507196.1| Seven TM Receptor family member (str-150) [Caenorhabditis elegans] 1.0E-176
blast CAB07276 Hypothetical protein T03E6.1 [Caenorhabditis elegans] ref|NP_507193.1| Seven TM Receptor family member (str-151) [Caenorhabditis elegans] 1.0E-174
blast CAB07278 Hypothetical protein T03E6.4 [Caenorhabditis elegans] ref|NP_507196.1| Seven TM Receptor family member (str-150) [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507193.1 7 6-28,41-63,83-105,126-148,203-225,245-267,282-304
NP_507196.1 7 5-27,40-62,82-104,125-147,201-223,244-266,281-303
T03E6.1 7 6-28,41-63,83-105,126-148,203-225,245-267,282-304
T03E6.4 7 5-27,40-62,82-104,125-147,201-223,244-266,281-303
SNAP00000008698 7 6-28,41-63,83-105,126-148,203-225,245-267,282-304
SNAP00000008699 7 6-28,41-63,83-102,123-145,198-220,240-262,277-299
GENEFINDER00000008707 7 5-27,40-62,82-104,125-147,203-225,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:178749_S_AT
aaagtttgttttattgcgccaatgtattggtcgattgggaaaaatggagagaaaatttgg
aatttttttgagattgggctagcatttggatgtgtgatgataattgttgtctgcttcacg
acaattctattctgctcaataaacatttattatttcatgacaagcatccagtgtcatatg
agcaaaagaacattggaactcaatcaccaacttttcgtcaccctcagctttcagactctt
ttaccatttgtcatgatgtacagtcctgtcggattgttgttttgccttccactatttgaa
gtttacgggggcgatattgcaaattacgtgggcgccactttagctctctacccggctttg
gagccactgattgcgattttcactatcaatgagttcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTTGTTTTATTGCGCCAATGT 292 121 532 Antisense
GAGATTGGGCTAGCATTTGGATGTG 241 397 601 Antisense
ATGTGTGATGATAATTGTTGTCTGC 91 51 621 Antisense
ATTCTATTCTGCTCAATAAACATTT 605 9 655 Antisense
ATTATTTCATGACAAGCATCCAGTG 403 13 680 Antisense
AAGCATCCAGTGTCATATGAGCAAA 389 151 693 Antisense
GGAACTCAATCACCAACTTTTCGTC 490 529 726 Antisense
CCATTTGTCATGATGTACAGTCCTG 136 269 775 Antisense
CATGATGTACAGTCCTGTCGGATTG 682 209 783 Antisense
TACGGGGGCGATATTGCAAATTACG 500 615 835 Antisense
ATTTTCACTATCAATGAGTTCAGAA 237 13 907 Antisense
Sequence Source Affymetrix Proprietary Database