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[178748_at]

Description F14B6.3 /REP_DB=WormBase Gene ID /WP=CE17665 /TR=O62160 /GB=CAB04104.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.4
(-3)
A 		7
(-1.7)
A 		5.9
(-1.9)
A 		26.9
(3)
A 		26
B 6
(-1.6)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		22.8
(3)
A 		22
C 26.2
(3)
A 		7.8
(-2.2)
A 		4.9
(-3)
A 		25.5
(2.8)
A 		21
avr 11.2
(-1) 		5.4
(-2.6) 		4
(-3) 		25.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 44
(1.6)
A 		1.7
(-2.9)
A 		0.8
(-3)
A 		29.1
(0)
A 		29.4
(0.1)
A 		56.8
(3)
A 		56
B 10.2
(-1.8)
A 		2.9
(-2.7)
A 		9.4
(-1.9)
A 		15.2
(-1.2)
A 		0.8
(-3)
A 		49.1
(3)
A 		48
C 1.6
(-3)
A 		4.4
(-2.6)
A 		3.1
(-2.8)
A 		12.7
(-1.5)
A 		11.9
(-1.6)
A 		44.6
(3)
P 		43
avr 18.6
(-1) 		3
(-3) 		4.4
(-2.8) 		19
(-1) 		14
(-1.6) 		50.2
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.5
(-3)
A 		1.5
(-1.2)
A 		1.5
(-1.2)
A 		3.9
(3)
A 		3
B 1.9
(-0.9)
A 		0.3
(-3)
A 		0.3
(-3)
A 		4.9
(3)
A 		5
C 8.7
(3)
A 		2.3
(-2.5)
A 		1.7
(-3)
A 		4.3
(-0.8)
A 		7
avr 3.7
(1.7) 		1.4
(-2.6) 		1.2
(-3) 		4.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.1
(0.5)
A 		0.6
(-2.8)
A 		0.2
(-3)
A 		7.4
(0.2)
A 		8.9
(0.8)
A 		13.8
(3)
A 		14
B 3.6
(-1.9)
A 		1
(-2.8)
A 		2.3
(-2.3)
A 		4
(-1.8)
A 		0.3
(-3)
A 		18.3
(3)
A 		18
C 0.6
(-3)
A 		1.3
(-2.7)
A 		0.8
(-2.9)
A 		2.6
(-2.2)
A 		3.8
(-1.7)
A 		14.9
(3)
P 		14
avr 4.1
(-1.7) 		1
(-3) 		1.1
(-3) 		4.7
(-1.5) 		4.3
(-1.7) 		15.7
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1325
Sequence Type Exemplar sequence
Representative Public ID F14B6.3 NCBI
Target Description F14B6.3 /REP_DB=WormBase Gene ID /WP=CE17665 /TR=O62160 /GB=CAB04104.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060685 NCBI Caenorhabditis elegans F14B6.3 (F14B6.3) mRNA, complete cds. 11/11 None
SNAP00000017559 ENSEMBL cdna:SNAP chromosome:CEL140:I:12238703:12240374:1 11/11 None
GENEFINDER00000017563 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12238703:12240374:1 11/11 None
F14B6.3 ENSEMBL cdna:known chromosome:CEL140:I:12238675:12240377:1 gene:F14B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12238633-12240305(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14B6.3
Entrez Gene 173104 Entrez gene
SwissProt O62160 EMBL-EBI
WormBase CE17665 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04104 Hypothetical protein F14B6.3 [Caenorhabditis elegans] ref|NP_493086.1| F14B6.3 [Caenorhabditis elegans] 1.0E-138
blast CAB04105 Hypothetical protein F14B6.1 [Caenorhabditis elegans] ref|NP_493084.1| F14B6.1 [Caenorhabditis elegans] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:178748_AT
atatttcgactggtgcctgtgcactgttgaacgagacggcggaaaagctgaagcagatgt
tcagctcgagtgggatctcaggtcggaaggagagttcagaagggaccaacaaggatctca
ttaaatttggggagttggagatcagaggtgatgaagaggaggatgatgacgacgagtctt
acgtggaaggtgaagaagaagatagttctgacgaggacttggacgatgaagatcaggaag
gagagtcctcaattgagccaaggctctcagaaactttcaaaaaatcggaagctcgagaat
cgctgagctcaaaagaagctccagttaaggacctagttatctatcaaaaattcagagatg
agcatgaagacttagaagagtccgagaatgagcccagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTCGACTGGTGCCTGTGCACT 574 19 530 Antisense
GTGCCTGTGCACTGTTGAACGAGAC 44 479 542 Antisense
GAAGCAGATGTTCAGCTCGAGTGGG 273 341 579 Antisense
GCTCGAGTGGGATCTCAGGTCGGAA 414 295 593 Antisense
GAAGGGACCAACAAGGATCTCATTA 479 333 628 Antisense
GATGACGACGAGTCTTACGTGGAAG 64 411 694 Antisense
GATAGTTCTGACGAGGACTTGGACG 393 425 730 Antisense
GGAGAGTCCTCAATTGAGCCAAGGC 251 519 769 Antisense
GAGCCAAGGCTCTCAGAAACTTTCA 641 383 784 Antisense
GAAGCTCCAGTTAAGGACCTAGTTA 701 335 844 Antisense
GAAGAGTCCGAGAATGAGCCCAGAA 95 339 904 Antisense
Sequence Source Affymetrix Proprietary Database