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[178747_at]

Description M02B1.3 /REP_DB=WormBase Gene ID /WP=CE12316 /TR=Q93892 /GB=CAB03202.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 76      6grp_total > 29      4grp_total > 52      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 949.8
(3)
P 		892.4
(0.6)
P 		948.5
(2.9)
P 		806.6
(-3)
P 		143
B 924.2
(-3)
P 		985.2
(3)
P 		930.2
(-2.4)
P 		936.1
(-1.8)
P 		61
C 984.6
(2.3)
P 		1022.5
(3)
P 		945.4
(1.6)
P 		698.3
(-3)
P 		324
avr 952.9
(2.5) 		966.7
(3) 		941.4
(2) 		813.7
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 1348.2
(3)
P 		1147.7
(0.4)
P 		885.9
(-3)
P 		978
(-1.8)
P 		1310.8
(2.5)
P 		1233.8
(1.5)
P 		462
B 1239.4
(1.1)
P 		1161
(-0.4)
P 		1030.2
(-3)
P 		1125.9
(-1.1)
P 		1333.7
(3)
P 		1063.3
(-2.3)
P 		304
C 1417.5
(3)
P 		1036.9
(-3)
P 		1102.7
(-2)
P 		1164.2
(-1)
P 		1222.1
(-0.1)
P 		1189.9
(-0.6)
P 		381
avr 1335
(3) 		1115.2
(-1) 		1006.3
(-3) 		1089.4
(-1.5) 		1288.9
(2.2) 		1162.3
(-0.2) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 345.8
(3)
P 		193.7
(-1)
P 		248
(0.4)
P 		118.1
(-3)
P 		228
B 294.7
(3)
P 		243.3
(-0.2)
P 		215.5
(-2)
P 		199.5
(-3)
P 		95
C 325.9
(2.9)
P 		294
(2)
P 		329.5
(3)
P 		117.7
(-3)
P 		212
avr 322.1
(3) 		243.7
(0.3) 		264.3
(1) 		145.1
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 248.5
(-1.5)
P 		408.2
(3)
P 		192.9
(-3)
P 		248.1
(-1.5)
P 		395.5
(2.6)
P 		300.4
(-0)
P 		215
B 431.3
(0.7)
P 		386.4
(-0.2)
P 		250.2
(-3)
P 		298.2
(-2)
P 		541.9
(3)
P 		396.5
(0)
P 		292
C 525.4
(3)
P 		316.4
(-1.3)
P 		280.7
(-2)
P 		234.1
(-3)
P 		395.4
(0.3)
P 		398.3
(0.4)
P 		291
avr 401.7
(1.7) 		370.3
(0.8) 		241.3
(-3) 		260.1
(-2.4) 		444.3
(3) 		365.1
(0.7) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10214
Sequence Type Exemplar sequence
Representative Public ID M02B1.3 NCBI
Target Description M02B1.3 /REP_DB=WormBase Gene ID /WP=CE12316 /TR=Q93892 /GB=CAB03202.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070044 NCBI Caenorhabditis elegans M02B1.3 (M02B1.3) mRNA, complete cds. 11/11 None
SNAP00000031734 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12836496:12839994:1 11/11 None
GENEFINDER00000031738 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12836496:12839994:1 11/11 None
M02B1.3 ENSEMBL cdna:known chromosome:CEL140:IV:12836478:12840644:1 gene:M02B1.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12836501-12840000(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B1.3
Entrez Gene 178236 Entrez gene
SwissProt Q93892 EMBL-EBI
WormBase CE12316 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03202 Hypothetical protein M02B1.3 [Caenorhabditis elegans] ref|NP_502445.1| M02B1.3 [Caenorhabditis elegans] 1.0E-176
blast CAB03202 Hypothetical protein M02B1.3 [Caenorhabditis elegans] ref|NP_502445.1| M02B1.3 [Caenorhabditis elegans] 1.0E-174
blast CAE74557 Hypothetical protein CBG22316 [Caenorhabditis briggsae] 1.0E-169
blast CAE74557 Hypothetical protein CBG22316 [Caenorhabditis briggsae] 1.0E-167
blast CAE74557 Hypothetical protein CBG22316 [Caenorhabditis briggsae] 1.0E-153
blast CAB03202 Hypothetical protein M02B1.3 [Caenorhabditis elegans] ref|NP_502445.1| M02B1.3 [Caenorhabditis elegans] 1.0E-152
blast AAK29804 Hypothetical protein F41H10.5 [Caenorhabditis elegans] ref|NP_500789.1| F41H10.5 [Caenorhabditis elegans] 6.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502445.1 6 46-68,89-111,154-176,181-203,223-245,252-274
M02B1.3 6 46-68,89-111,154-176,181-203,223-245,252-274
SNAP00000031734 6 46-68,89-111,154-176,181-203,223-245,252-274
GENEFINDER00000031738 8 70-92,107-129,142-164,174-196,208-230,234-256,277-299,304-326
Sequence
Target Sequence 
>C. ELEGANS:178747_AT
tccactccattattacacgtatctcgattcacaaattatcactctttcaatcggatattt
cttttacgatggaattgatctcgttatgaacgataaactctcaatttccactggtgtact
tttattccatcatgttgcctccatctatgtactttcaacggctgttctttcaaagaaatt
ccttttatacgcgtattgggcaatgctcatggaggtctcatcaatcttcctgcacacaag
atccatccttcacatctctaagctttcgacgacgtcgatgatcggattctcgaaagttgt
ctcctatttgaatttgataactttcatcgtgttccgtggattcgttcaattcttcctctt
cggatgggcatgggtcaactatgatcatattcatttcatcttcaagtgcatcgctttcgg
tggaggcttctgttttgcagtgatcaacgtcagcttattgcttagaatattgcactctga
tggattcttgctctcgtctgtcgtctcacaagatcgtctggatgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTCCATTATTACACGTATCTC 32 589 372 Antisense
ACTTTTATTCCATCATGTTGCCTCC 585 101 489 Antisense
TTGCCTCCATCTATGTACTTTCAAC 257 703 506 Antisense
CATGGAGGTCTCATCAATCTTCCTG 412 209 579 Antisense
ACATCTCTAAGCTTTCGACGACGTC 82 107 623 Antisense
ATAACTTTCATCGTGTTCCGTGGAT 494 23 688 Antisense
CGTGGATTCGTTCAATTCTTCCTCT 438 245 706 Antisense
TTCTTCCTCTTCGGATGGGCATGGG 479 689 721 Antisense
CATCTTCAAGTGCATCGCTTTCGGT 64 213 768 Antisense
GCACTCTGATGGATTCTTGCTCTCG 128 317 843 Antisense
GTCTCACAAGATCGTCTGGATGCCC 70 471 874 Antisense
Sequence Source Affymetrix Proprietary Database