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[178746_s_at]

Description F26E4.4 /REP_DB=WormBase Gene ID /WP=CE09688 /TR=P90847 /GB=CAB02998.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 88      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 95      6grp_total > 88      4grp_total > 25      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 513
1 2 3 4 range
A 493.9
(-3)
P 		640.1
(3)
P 		617.7
(2.1)
P 		566.7
(-0)
P 		146
B 338
(-3)
P 		593.7
(-0)
P 		410.2
(-2.2)
P 		851.2
(3)
P 		513
C 627.9
(1.1)
P 		558.7
(-3)
P 		658.8
(2.9)
P 		660.1
(3)
P 		101
avr 486.6
(-3) 		597.5
(0.2) 		562.2
(-0.8) 		692.7
(3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 869
1 2 3 4 5 6 range
A 572.8
(-1.6)
P 		469.4
(-3)
P 		523.9
(-2.3)
P 		541.5
(-2)
P 		750.1
(0.8)
P 		912.3
(3)
P 		443
B 575.1
(-2)
P 		557.7
(-2.1)
P 		425.3
(-3)
P 		643.4
(-1.5)
P 		886.5
(0.2)
P 		1294
(3)
P 		869
C 525.5
(-2.2)
P 		527.9
(-2.2)
P 		435.2
(-3)
P 		519.1
(-2.2)
P 		699.9
(-0.6)
P 		1099.6
(3)
P 		664
avr 557.8
(-2.1) 		518.3
(-2.5) 		461.5
(-3) 		568
(-2) 		778.8
(-0) 		1102
(3) 		641
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 179.8
(3)
P 		138.9
(0.5)
P 		161.5
(1.9)
P 		83
(-3)
P 		97
B 107.8
(-2.1)
P 		146.6
(0.6)
P 		95.1
(-3)
P 		181.4
(3)
P 		86
C 207.9
(1.9)
P 		160.6
(-0.5)
P 		229.6
(3)
P 		111.3
(-3)
P 		118
avr 165.2
(3) 		148.7
(0.5) 		162.1
(2.5) 		125.2
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 105.6
(-3)
P 		166.9
(0)
P 		114.1
(-2.6)
P 		137.3
(-1.4)
P 		226.4
(3)
P 		222.1
(2.8)
P 		121
B 200.1
(-1.5)
P 		185.6
(-1.7)
P 		103.3
(-3)
P 		170.4
(-1.9)
P 		360.2
(1.1)
P 		482.5
(3)
P 		379
C 194.8
(-0.9)
P 		161.1
(-1.7)
P 		110.8
(-2.9)
P 		104.4
(-3)
P 		226.5
(-0.2)
P 		368.1
(3)
P 		264
avr 166.8
(-1.6) 		171.2
(-1.5) 		109.4
(-3) 		137.4
(-2.3) 		271
(0.9) 		357.6
(3) 		248
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178746_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2061
Sequence Type Exemplar sequence
Representative Public ID F26E4.4 NCBI
Target Description F26E4.4 /REP_DB=WormBase Gene ID /WP=CE09688 /TR=P90847 /GB=CAB02998.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060194 NCBI Caenorhabditis elegans F26E4.4 (F26E4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000026241 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9777233:9780681:-1 9/11 None
SNAP00000026225 ENSEMBL cdna:SNAP chromosome:CEL140:I:9779313:9780681:-1 11/11 None
F26E4.4 ENSEMBL cdna:known chromosome:CEL140:I:9778706:9780686:-1 gene:F26E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9779243-9780612(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26E4.4
Entrez Gene 259393 Entrez gene
SwissProt P90847 EMBL-EBI
WormBase CE09688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02998 Hypothetical protein F26E4.4 [Caenorhabditis elegans] ref|NP_492595.1| F26E4.4 [Caenorhabditis elegans] 0.0
blast CAB03003 Hypothetical protein F26E4.5 [Caenorhabditis elegans] ref|NP_492594.2| F26E4.5 [Caenorhabditis elegans] 0.0
blast CAE60232 Hypothetical protein CBG03803 [Caenorhabditis briggsae] 0.0
blast CAE60231 Hypothetical protein CBG03802 [Caenorhabditis briggsae] 1.0E-129
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 3.0E-52
hanks 2.1.14 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-K 4.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 3.8E-20
Pfam IPR000719 EMBL-EBI Protein kinase 4.8E-68
Sequence
Target Sequence 
>C. ELEGANS:178746_S_AT
gaaaagcgactcctgaacaattgatcaatatgttagaagcttcttctagcgatcttcttc
atctccagcttccatccgttatcggatctatatgtaataatatcgaagcaaatgtggaag
cgtcaatggaagtggatgaaccagacaatgatgttccaactggaatcgtctcagctccac
ctccaccatccggtctgccacaaaaccgaaaaattggaaagttgcaagtcactcgtaaag
gacgtatgattctgaaaatcggtgggcattcaatagatatcacatcaaagccaactactg
ggaagaaacaaggaactgttcttcttgaagttgatccaaatgctgatcaacttcaagcac
catccacattttctagtgctccagaaatgattaattcgctgtaccaccttggaaatgtga
agcataacctggttggatcaatgacctggggagcattgaatgaaaagtcgaagcgaattg
atgacgcaggagaaataaacgacgttgaaatgagagatgatgaggtttctgacgcagttg
acgaaaagaaaattgagcaactggaaaaagaacagagcaaatggggagctctcgcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGCGACTCCTGAACAATTGAT 107 355 611 Antisense
AGAAGCTTCTTCTAGCGATCTTCTT 103 75 645 Antisense
TCCAGCTTCCATCCGTTATCGGATC 208 589 674 Antisense
CCATCCGGTCTGCCACAAAACCGAA 225 271 796 Antisense
GGAAAGTTGCAAGTCACTCGTAAAG 660 525 826 Antisense
AGATATCACATCAAAGCCAACTACT 171 67 885 Antisense
TGCTGATCAACTTCAAGCACCATCC 125 581 951 Antisense
CACCATCCACATTTTCTAGTGCTCC 419 201 968 Antisense
AATGATTAATTCGCTGTACCACCTT 139 165 996 Antisense
GATGATGAGGTTTCTGACGCAGTTG 435 411 1126 Antisense
GAGCAAATGGGGAGCTCTCGCAGAA 81 391 1185 Antisense
Sequence Source Affymetrix Proprietary Database