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[178744_at]

Description M02G9.2 /REP_DB=WormBase Gene ID /WP=CE16276 /TR=O17969 /GB=CAB04624.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 56.3
(-3)
A 		283.3
(3)
A 		233.6
(1.7)
A 		73
(-2.6)
A 		227
B 121.3
(-2.5)
A 		220.6
(1.2)
A 		269.9
(3)
M 		108.4
(-3)
A 		162
C 76
(-3)
A 		269.1
(3)
A 		265.6
(2.9)
P 		122.7
(-1.5)
A 		193
avr 84.5
(-3) 		257.7
(3) 		256.4
(3) 		101.4
(-2.4) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 138.8
(-1)
A 		224.8
(3)
P 		96.3
(-3)
A 		122.9
(-1.8)
A 		214.1
(2.5)
A 		170.1
(0.4)
A 		129
B 92.9
(-3)
A 		194.7
(3)
A 		116.7
(-1.6)
A 		130
(-0.8)
A 		164.4
(1.2)
A 		111.6
(-1.9)
A 		102
C 107.3
(-3)
A 		202.1
(3)
A 		162.2
(0.5)
A 		189.6
(2.2)
A 		165.1
(0.7)
A 		163.4
(0.6)
A 		95
avr 113
(-3) 		207.2
(3) 		125.1
(-2.2) 		147.5
(-0.8) 		181.2
(1.3) 		148.4
(-0.7) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 20.5
(-1.8)
A 		61.5
(3)
A 		61.1
(3)
A 		10.7
(-3)
A 		51
B 38.7
(-0.6)
A 		54.5
(1.8)
A 		62.5
(3)
M 		23.1
(-3)
A 		39
C 25.2
(-2.6)
A 		77.4
(1.7)
A 		92.6
(3)
P 		20.7
(-3)
A 		72
avr 28.1
(-1.9) 		64.5
(2.2) 		72.1
(3) 		18.2
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 25.6
(-2.5)
A 		80
(3)
P 		21
(-3)
A 		31.2
(-2)
A 		64.6
(1.4)
A 		41.4
(-0.9)
A 		59
B 32.3
(-2.4)
A 		64.8
(2.7)
A 		28.3
(-3)
A 		34.4
(-2)
A 		66.8
(3)
A 		41.6
(-0.9)
A 		39
C 39.8
(-2.6)
A 		61.7
(3)
A 		41.3
(-2.2)
A 		38.1
(-3)
A 		53.4
(0.9)
A 		54.7
(1.2)
A 		24
avr 32.6
(-2.6) 		68.8
(3) 		30.2
(-3) 		34.6
(-2.3) 		61.6
(1.9) 		45.9
(-0.6) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3574
Sequence Type Exemplar sequence
Representative Public ID M02G9.2 NCBI
Target Description M02G9.2 /REP_DB=WormBase Gene ID /WP=CE16276 /TR=O17969 /GB=CAB04624.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063821 NCBI Caenorhabditis elegans M02G9.2 (M02G9.2) mRNA, complete cds. 11/11 None
SNAP00000014966 ENSEMBL cdna:SNAP chromosome:CEL140:II:10321402:10323646:1 11/11 None
GENEFINDER00000014972 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10321958:10324603:1 11/11 None
M02G9.2 ENSEMBL cdna:known chromosome:CEL140:II:10321402:10324603:1 gene:M02G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10321398-10323498(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02G9.2
Entrez Gene 187405 Entrez gene
SwissProt O17969 EMBL-EBI
WormBase CE37923 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04624 Hypothetical protein M02G9.2 [Caenorhabditis elegans] ref|NP_496222.2| M02G9.2 [Caenorhabditis elegans] 0.0
blast CAB04624 Hypothetical protein M02G9.2 [Caenorhabditis elegans] ref|NP_496222.2| M02G9.2 [Caenorhabditis elegans] 1.0E-173
blast CAE59373 Hypothetical protein CBG02724 [Caenorhabditis briggsae] 1.0E-160
blast CAE59373 Hypothetical protein CBG02724 [Caenorhabditis briggsae] 1.0E-133
blast CAA94868 Hypothetical protein AC3.4 [Caenorhabditis elegans] ref|NP_505668.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-2) [Caenorhabditis elegans] 7.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 5.7E-8
Sequence
Target Sequence 
>C. ELEGANS:178744_AT
acatcagcaccggtcattttgagccagaaaatccagataacttgcccaacagaatgtcag
ccagcctgcagttttgtgtgcaccaagttgcgtccaactctgaaagtgatcacccaaatg
tttgattctaaaactgatgagaccacatgcagaacaagttgtagcagtgcttgcttgtcc
gtttgcgcttcatctggagttccgggaaacgaatgccaatcgaattgcgcgccagcatgt
gaagacacttgtactattgtgaagcccgtcgccgttgccacaaccactcaaattcaatcg
acgtcatcgagcggtggtcagtgtgtttctgtttgcatgccagcttgcactcaacaatgc
atgtttactgttcagaagtatcaaaaagtaattttacagatgcaaatcgctttgtcacaa
gccgttcctcaaacaactgagaaaccaactcaagccgtgctcattccaattgcaccagtt
tcgattgtagtttcagatccacccaccacaactgccgctccaactgtcattactcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCAGCACCGGTCATTTTGAGCC 397 105 520 Antisense
AGAATGTCAGCCAGCCTGCAGTTTT 568 73 570 Antisense
TTGTGTGCACCAAGTTGCGTCCAAC 51 709 593 Antisense
GTTGTAGCAGTGCTTGCTTGTCCGT 620 437 677 Antisense
CAATCGAATTGCGCGCCAGCATGTG 538 181 736 Antisense
GTCATCGAGCGGTGGTCAGTGTGTT 65 467 822 Antisense
GTGTGTTTCTGTTTGCATGCCAGCT 578 487 840 Antisense
CATGCCAGCTTGCACTCAACAATGC 348 211 855 Antisense
GAGAAACCAACTCAAGCCGTGCTCA 317 391 958 Antisense
AGCCGTGCTCATTCCAATTGCACCA 154 83 972 Antisense
CCGCTCCAACTGTCATTACTCTTGG 256 263 1034 Antisense
Sequence Source Affymetrix Proprietary Database