[Home] | [Total List]

[178743_at]

Description T06E6.7 /REP_DB=WormBase Gene ID /WP=CE16366 /TR=O45761 /GB=CAB03316.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 13      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 46.5
(-2.3)
A 		62.2
(-0.4)
A 		40.7
(-3)
A 		90
(3)
A 		49
B 62.4
(3)
A 		5.4
(-3)
A 		10.9
(-2.4)
A 		35.4
(0.2)
A 		57
C 20.6
(-1.8)
A 		5.3
(-3)
A 		15
(-2.2)
A 		80.1
(3)
P 		75
avr 43.2
(-0.3) 		24.3
(-2.7) 		22.2
(-3) 		68.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 25.4
(-0.7)
A 		19.2
(-1.5)
A 		26.9
(-0.5)
A 		47.7
(2.1)
A 		54.9
(3)
A 		6.8
(-3)
A 		48
B 31.6
(2.5)
A 		34.1
(3)
A 		4.6
(-2.9)
A 		3.9
(-3)
A 		9.8
(-1.8)
A 		5.3
(-2.7)
A 		30
C 16.2
(-1.9)
A 		54.6
(2)
P 		7.3
(-2.8)
A 		64.6
(3)
A 		5.1
(-3)
A 		27.1
(-0.8)
A 		60
avr 24.4
(-0.3) 		36
(2.4) 		12.9
(-3) 		38.7
(3) 		23.3
(-0.6) 		13.1
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.9
(3)
A 		13.5
(-0.2)
A 		10.6
(-3)
A 		13.2
(-0.5)
A 		6
B 19.9
(3)
A 		1.3
(-3)
A 		2.5
(-2.6)
A 		7.5
(-1)
A 		19
C 6.8
(-0.4)
A 		1.5
(-3)
A 		5.2
(-1.2)
A 		13.5
(3)
P 		12
avr 14.5
(3) 		5.4
(-3) 		6.1
(-2.5) 		11.4
(1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.7
(-1.8)
A 		6.8
(-0.9)
A 		5.9
(-1.3)
A 		12.1
(1.2)
A 		16.6
(3)
A 		1.7
(-3)
A 		15
B 11
(2.8)
A 		11.3
(3)
A 		1.1
(-2.9)
A 		1
(-3)
A 		4
(-1.3)
A 		2
(-2.4)
A 		10
C 6
(-1.3)
A 		16.7
(3)
P 		1.9
(-2.9)
A 		13
(1.5)
A 		1.7
(-3)
A 		9.1
(-0)
A 		15
avr 7.2
(-0.1) 		11.6
(3) 		3
(-3) 		8.7
(1) 		7.4
(0.1) 		4.3
(-2.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12893
Sequence Type Exemplar sequence
Representative Public ID T06E6.7 NCBI
Target Description T06E6.7 /REP_DB=WormBase Gene ID /WP=CE16366 /TR=O45761 /GB=CAB03316.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074429 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-258) (srh-258) mRNA, complete cds. 11/11 None
T06E6.7 ENSEMBL cdna:known chromosome:CEL140:V:15407745:15409346:1 gene:T06E6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027753 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15407744-15409346(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-258
Ensembl T06E6.7
Entrez Gene 188186 Entrez gene
SwissProt O45761 EMBL-EBI
WormBase CE36014 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03316 Hypothetical protein T06E6.7 [Caenorhabditis elegans] ref|NP_506830.2| Serpentine Receptor, class H family member (srh-258) [Caenorhabditis elegans] 0.0
blast CAB03315 Hypothetical protein T06E6.6 [Caenorhabditis elegans] ref|NP_506831.2| Serpentine Receptor, class H family member (srh-257) [Caenorhabditis elegans] 1.0E-122
blast CAB03317 Hypothetical protein T06E6.8 [Caenorhabditis elegans] ref|NP_506833.2| Serpentine Receptor, class H family member (srh-264) [Caenorhabditis elegans] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506830.2 7 10-31,52-74,89-108,128-147,189-211,232-254,269-291
T06E6.7 7 10-31,52-74,89-108,128-147,189-211,232-254,269-291
Sequence
Target Sequence 
>C. ELEGANS:178743_AT
tgataccttttatgttgcgtgcaccggatcaggatgaaggcatagaaattgtatatcaga
aagtcccatctttatcatctgaaatcaaaaatatgaaattgttcgttttggctactgatt
ataacctttttgtcgttgaattggtattcatgggagcctttcttatttttgaaatgttct
cattaaccatgttaaaccgatggaactttaagatgacatccacgaaatgtaacctttctc
gtcaaacgatgatgattcagagaaagtttctaataacaatttatacacaggtcgggaatt
ttaaaacaaaattttcaatgtttggtgtattttccataacgtgttttgttccgtacctat
acattgtcatatcttgctacttgaattatcacaaccagtcagcaaacaactacacaattg
tctcattttcatttcatggtattacaagctcaatgatattactgtggacttataacccct
atacaaaagttgttaacgcaatcttttatcgaatactgactttgttgcattgccaaccac
acctggaggttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATACCTTTTATGTTGCGTGCACC 412 563 437 Antisense
GTTGCGTGCACCGGATCAGGATGAA 518 439 450 Antisense
AAGTCCCATCTTTATCATCTGAAAT 381 157 497 Antisense
AATTGTTCGTTTTGGCTACTGATTA 383 177 533 Antisense
TTCATGGGAGCCTTTCTTATTTTTG 609 687 583 Antisense
ATGTAACCTTTCTCGTCAAACGATG 558 45 663 Antisense
GTGTTTTGTTCCGTACCTATACATT 406 485 777 Antisense
ATACATTGTCATATCTTGCTACTTG 131 25 795 Antisense
ATTACTGTGGACTTATAACCCCTAT 220 3 894 Antisense
GAATACTGACTTTGTTGCATTGCCA 345 325 947 Antisense
ATTGCCAACCACACCTGGAGGTTCA 468 7 965 Antisense
Sequence Source Affymetrix Proprietary Database