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[178742_s_at]

Description F57C2.5 /REP_DB=WormBase Gene ID /WP=CE16156 /TR=O62265 /GB=CAB05527.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 72      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 55      6grp_total > 61      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 790
1 2 3 4 range
A 1215.2
(3)
P 		1028.6
(1.4)
P 		979.4
(1)
P 		507.5
(-3)
P 		708
B 1221
(3)
P 		899.6
(0.6)
P 		1127.4
(2.3)
P 		430.7
(-3)
P 		790
C 1051
(3)
P 		954.9
(1.8)
P 		994.8
(2.3)
P 		549.8
(-3)
P 		501
avr 1162.4
(3) 		961
(1.2) 		1033.9
(1.8) 		496
(-3) 		666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1315
1 2 3 4 5 6 range
A 1067
(-3)
P 		1251.1
(-2)
P 		1887.3
(1.5)
P 		2157.4
(3)
P 		1397.3
(-1.2)
P 		1452.7
(-0.9)
P 		1090
B 1254.6
(-2.7)
P 		1250.1
(-2.7)
P 		1804.1
(1.5)
P 		2004.5
(3)
P 		1596
(-0.1)
P 		1214.7
(-3)
P 		790
C 1164.9
(-3)
P 		1211.8
(-2.8)
P 		2082.1
(1.5)
P 		2382.4
(3)
P 		1454.1
(-1.6)
P 		1208.4
(-2.8)
P 		1218
avr 1162.2
(-3) 		1237.7
(-2.6) 		1924.5
(1.5) 		2181.4
(3) 		1482.5
(-1.1) 		1291.9
(-2.2) 		1019
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 442.4
(3)
P 		223.3
(-0.6)
P 		256
(-0)
P 		74.3
(-3)
P 		368
B 389.4
(3)
P 		222.2
(-0.4)
P 		261.2
(0.4)
P 		91.8
(-3)
P 		298
C 347.9
(3)
P 		274.6
(1.3)
P 		346.7
(3)
P 		92.7
(-3)
P 		255
avr 393.2
(3) 		240
(0) 		288
(0.9) 		86.3
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 196.7
(-3)
P 		445
(1.3)
P 		411
(0.7)
P 		547.2
(3)
P 		421.6
(0.8)
P 		353.7
(-0.3)
P 		351
B 436.6
(-2.5)
P 		416.1
(-3)
P 		438.1
(-2.4)
P 		530.9
(-0)
P 		648.5
(3)
P 		453
(-2)
P 		232
C 431.8
(-0.7)
P 		369.8
(-3)
P 		529.9
(3)
P 		479.1
(1.1)
P 		470.5
(0.8)
P 		404.5
(-1.7)
P 		160
avr 355
(-3) 		410.3
(-1) 		459.7
(0.8) 		519.1
(3) 		513.5
(2.8) 		403.7
(-1.2) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178742_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2850
Sequence Type Exemplar sequence
Representative Public ID F57C2.5 NCBI
Target Description F57C2.5 /REP_DB=WormBase Gene ID /WP=CE16156 /TR=O62265 /GB=CAB05527.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064618 NCBI Caenorhabditis elegans F57C2.5 (F57C2.5) mRNA, complete cds. 11/11 None
SNAP00000006886 ENSEMBL cdna:SNAP chromosome:CEL140:II:14526223:14528016:-1 11/11 None
GENEFINDER00000006891 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14526223:14528099:-1 11/11 None
F57C2.5 ENSEMBL cdna:known chromosome:CEL140:II:14526167:14528187:-1 gene:F57C2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14526219-14528096(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C2.5
Entrez Gene 175112 Entrez gene
SwissProt O62265 EMBL-EBI
WormBase CE16156 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7395.1.S1_AT similar to Adipocyte plasma membrane-associated protein (BSCv protein) cfa
CANINE_2:CFAAFFX.7395.1.S1_S_AT similar to Adipocyte plasma membrane-associated protein (BSCv protein) cfa
CANINE_2:CFAAFFX.7399.1.S1_AT similar to Adipocyte plasma membrane-associated protein (BSCv protein) cfa
DROSOPHILA_2:1635740_AT Hemomucin dm
DROSGENOME1:143836_AT Hemomucin dm
CHICKEN:GGAAFFX.12936.1.S1_S_AT similar to brain-selective and closely mapped on the counter allele of CMAP in cystatin cluster gga
HG-U133_PLUS_2:206656_S_AT chromosome 20 open reading frame 3 hs
HG-U133A:206656_S_AT chromosome 20 open reading frame 3 hs
HG-FOCUS:206656_S_AT chromosome 20 open reading frame 3 hs
HG-U133A_2:206656_S_AT chromosome 20 open reading frame 3 hs
HU35KSUBA:RC_AA256171_AT chromosome 20 open reading frame 3 hs
HU35KSUBA:N40320_AT chromosome 20 open reading frame 3 hs
HU35KSUBA:AA455403_AT chromosome 20 open reading frame 3 hs
U133_X3P:G12653170_3P_S_AT chromosome 20 open reading frame 3 hs
HG-U95B:48829_S_AT chromosome 20 open reading frame 3 hs
HG-U95B:57905_AT chromosome 20 open reading frame 3 hs
MG-U74AV2:160217_AT RIKEN cDNA 2310001A20 gene mm
MG-U74BV2:164705_AT RIKEN cDNA 2310001A20 gene mm
MOE430A:1452159_AT RIKEN cDNA 2310001A20 gene mm
MOUSE430A_2:1452159_AT RIKEN cDNA 2310001A20 gene mm
MOUSE430_2:1452159_AT RIKEN cDNA 2310001A20 gene mm
MOE430A:1439262_X_AT RIKEN cDNA 2310001A20 gene mm
MOUSE430A_2:1439262_X_AT RIKEN cDNA 2310001A20 gene mm
MOUSE430_2:1439262_X_AT RIKEN cDNA 2310001A20 gene mm
MU19KSUBA:TC15376_AT RIKEN cDNA 2310001A20 gene (2310001A20Rik), mRNA mm
MU19KSUBC:TC35029_AT RIKEN cDNA 2310001A20 gene (2310001A20Rik), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16844 strictosidine synthase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05527 Hypothetical protein F57C2.5 [Caenorhabditis elegans] ref|NP_497019.1| F57C2.5 [Caenorhabditis elegans] 0.0
blast CAE73427 Hypothetical protein CBG20870 [Caenorhabditis briggsae] 1.0E-176
blast CAE73427 Hypothetical protein CBG20870 [Caenorhabditis briggsae] 1.0E-175
blast CAE73427 Hypothetical protein CBG20870 [Caenorhabditis briggsae] 1.0E-169
blast XP_850086 PREDICTED: similar to Adipocyte plasma membrane-associated protein (BSCv protein) [Canis familiaris] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR004141 EMBL-EBI Strictosidine synthase 1.0E-126
Pfam IPR004141 EMBL-EBI Strictosidine synthase 1.8E-70
Pfam IPR004141 EMBL-EBI Strictosidine synthase 1.1E-124
Pfam IPR004141 EMBL-EBI Strictosidine synthase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178742_S_AT
ggatagttcaacacgtcacgaccgtcggcattttatggctgcaatcctcgaacatcaagc
cgacggacgcatttttcatctgaaaatctcgacaaaaagcgtaaaagtgttggctgataa
gctgtattttcccaatggaattcaattaacggaggataagaaatctgtgattttcgcgga
atgtagtatggcgagaatcaagaaattgacgattgcatcgaaaaaagtggaaatgttcgc
ggccaatttgccaggccttccggataatattcgtagcagtggccgtggaacttattgggt
tggacttacagcgactcgctcagcaactcatccatctcttctcgaccggctcggcagtct
tcctggaatccggcaattccttgttgacatcgtgccaggaccctactggaaaccacttct
cggtctcttcaaaaacccgcattccatcatcatcgagctcgattccgtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAGTTCAACACGTCACGACCGT 457 503 576 Antisense
ACGACCGTCGGCATTTTATGGCTGC 122 93 593 Antisense
TTATGGCTGCAATCCTCGAACATCA 63 681 608 Antisense
TCAAGCCGACGGACGCATTTTTCAT 31 633 630 Antisense
AATGTTCGCGGCCAATTTGCCAGGC 84 163 807 Antisense
TTTGCCAGGCCTTCCGGATAATATT 425 659 822 Antisense
GACTTACAGCGACTCGCTCAGCAAC 620 369 878 Antisense
CAGTCTTCCTGGAATCCGGCAATTC 604 205 930 Antisense
GCAATTCCTTGTTGACATCGTGCCA 403 323 948 Antisense
GTGCCAGGACCCTACTGGAAACCAC 351 477 967 Antisense
TCATCATCGAGCTCGATTCCGTCGG 284 621 1022 Antisense
Sequence Source Affymetrix Proprietary Database