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[178740_at]

Description T22C1.9 /REP_DB=WormBase Gene ID /WP=CE06497 /TR=Q22669 /GB=CAA99925.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 810
1 2 3 4 range
A 2.8
(-3)
A 		36.3
(-2.7)
A 		25.1
(-2.8)
A 		739.4
(3)
P 		737
B 36.1
(-2.7)
P 		3.9
(-3)
A 		10.2
(-2.9)
A 		660
(3)
P 		656
C 8.2
(-3)
A 		6.4
(-3)
A 		23.3
(-2.9)
A 		813
(3)
P 		807
avr 15.7
(-3) 		15.5
(-3) 		19.5
(-3) 		737.5
(3) 		722

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 8.6
(-3)
A 		11.6
(-2.9)
A 		19.5
(-2.7)
A 		30
(-2.4)
A 		65.1
(-1.5)
P 		236
(3)
P 		227
B 44.1
(-2)
A 		8.6
(-2.9)
A 		5.4
(-3)
A 		24.1
(-2.5)
A 		93.6
(-0.8)
P 		243.3
(3)
P 		238
C 4.4
(-3)
A 		35.4
(-2.2)
A 		11.9
(-2.8)
A 		29.7
(-2.3)
A 		94.1
(-0.7)
P 		234.2
(3)
P 		230
avr 19
(-2.8) 		18.5
(-2.8) 		12.3
(-3) 		27.9
(-2.6) 		84.3
(-1.1) 		237.8
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 1
(-3)
A 		7.9
(-2.6)
A 		6.6
(-2.7)
A 		108.2
(3)
P 		107
B 11.5
(-2.5)
P 		1
(-3)
A 		2.4
(-2.9)
A 		140.6
(3)
P 		140
C 2.7
(-3)
A 		1.8
(-3)
A 		8.1
(-2.7)
A 		137.1
(3)
P 		135
avr 5.1
(-2.9) 		3.6
(-3) 		5.7
(-2.9) 		128.6
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 1.6
(-3)
A 		4.1
(-2.7)
A 		4.3
(-2.7)
A 		7.6
(-2.4)
A 		19.6
(-1.1)
P 		57.5
(3)
P 		56
B 15.3
(-2.1)
A 		2.9
(-2.9)
A 		1.3
(-3)
A 		6.4
(-2.7)
A 		38
(-0.5)
P 		90.7
(3)
P 		89
C 1.6
(-3)
A 		10.8
(-2.3)
A 		3
(-2.9)
A 		6
(-2.7)
A 		30.5
(-0.7)
P 		78.4
(3)
P 		77
avr 6.2
(-2.7) 		5.9
(-2.8) 		2.9
(-3) 		6.7
(-2.7) 		29.4
(-0.8) 		75.5
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1264
Sequence Type Exemplar sequence
Representative Public ID T22C1.9 NCBI
Target Description T22C1.9 /REP_DB=WormBase Gene ID /WP=CE06497 /TR=Q22669 /GB=CAA99925.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059794 NCBI Caenorhabditis elegans T22C1.9 (T22C1.9) mRNA, complete cds. 11/11 None
SNAP00000000053 ENSEMBL cdna:SNAP chromosome:CEL140:I:7966835:7967787:1 11/11 None
GENEFINDER00000000062 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7966835:7969258:1 11/11 None
T22C1.9 ENSEMBL cdna:known chromosome:CEL140:I:7966829:7968063:1 gene:T22C1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7966765-7967718(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22C1.9
Entrez Gene 172572 Entrez gene
SwissProt Q22669 EMBL-EBI
WormBase CE32498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99925 Hypothetical protein T22C1.9 [Caenorhabditis elegans] ref|NP_492195.2| T22C1.9 [Caenorhabditis elegans] 7.0E-90
blast CAA99925 Hypothetical protein T22C1.9 [Caenorhabditis elegans] ref|NP_492195.2| T22C1.9 [Caenorhabditis elegans] 2.0E-84
blast CAA99925 Hypothetical protein T22C1.9 [Caenorhabditis elegans] ref|NP_492195.2| T22C1.9 [Caenorhabditis elegans] 2.0E-80
blast CAE63691 Hypothetical protein CBG08203 [Caenorhabditis briggsae] 3.0E-37
blast CAE63691 Hypothetical protein CBG08203 [Caenorhabditis briggsae] 6.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492195.2 1 35-57
T22C1.9 1 35-57
SNAP00000000053 1 35-57
GENEFINDER00000000062 2 35-57,235-254
Sequence
Target Sequence 
>C. ELEGANS:178740_AT
tacttcgtcttcacttatcactaaaagagttttgactctcggtaataatgtcacaattga
tatatacgatcatcattattatccaatgtggttttggattgtaatttctgttggatttgt
cttctgtactctgagctgtgctgtttggtttatgtgtgctatgtggagattgaaaaaggg
taaagaatgtaaccatccatcgtttgaagcgcgtaccgttgtgacaaaagatggagaaga
gaaaccggatcccaaaatggctcaaaaatcagaaaagacttgtaaaaaattaggtgcatt
gggtgaagctgaatcgttggccaagagcttcaaaagtatcagatcgaaaaagtcgatgaa
gtctacaaaatccaagaaatctgaaaaagatgtaggacatgatgatcataagaaggaaga
tgttcatggtgatcaaaaggatgataataaagatcgaaacgatggaggacgagattctca
tgttgttcagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCGTCTTCACTTATCACTAAA 500 643 30 Antisense
GAGTTTTGACTCTCGGTAATAATGT 664 397 56 Antisense
TCTGTTGGATTTGTCTTCTGTACTC 398 609 136 Antisense
TTCTGTACTCTGAGCTGTGCTGTTT 123 695 151 Antisense
GAGCTGTGCTGTTTGGTTTATGTGT 369 387 162 Antisense
GTAACCATCCATCGTTTGAAGCGCG 141 463 218 Antisense
GTTTGAAGCGCGTACCGTTGTGACA 707 451 231 Antisense
GAAACCGGATCCCAAAATGGCTCAA 168 357 270 Antisense
GGGTGAAGCTGAATCGTTGGCCAAG 644 497 330 Antisense
GAATCGTTGGCCAAGAGCTTCAAAA 534 329 340 Antisense
GACGAGATTCTCATGTTGTTCAGAT 499 379 497 Antisense
Sequence Source Affymetrix Proprietary Database