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[178738_at] 7TM chemoreceptor, sri family

Description F15H9.3 /REP_DB=WormBase Gene ID /WP=CE17677 /TR=O62176 /GB=CAB04117.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 36      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.8
(3)
A 		10.6
(-1.5)
A 		5.7
(-3)
A 		7.1
(-2.6)
A 		19
B 8.6
(-3)
A 		18.1
(-0.1)
A 		20.9
(0.8)
A 		28
(3)
A 		19
C 22.5
(1.3)
A 		28.4
(3)
A 		7.5
(-3)
A 		15.1
(-0.8)
A 		21
avr 18.6
(2.7) 		19
(3) 		11.4
(-3) 		16.7
(1.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5
(-2.6)
A 		9.7
(-1.6)
A 		29.9
(3)
A 		3.4
(-3)
A 		5
(-2.6)
A 		7.1
(-2.2)
A 		27
B 29.4
(1.9)
A 		10.8
(-2.2)
A 		34.3
(3)
A 		14.6
(-1.3)
A 		26.7
(1.3)
A 		7.1
(-3)
A 		27
C 17.3
(-1.4)
A 		39.5
(3)
A 		34.3
(2)
A 		19.4
(-1)
A 		9.5
(-3)
A 		25.7
(0.2)
A 		30
avr 17.2
(-1.6) 		20
(-0.8) 		32.8
(3) 		12.5
(-3) 		13.7
(-2.6) 		13.3
(-2.8) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9
(3)
A 		2.3
(-2)
A 		1.5
(-2.6)
A 		1
(-3)
A 		8
B 2.8
(-3)
A 		4.5
(0.2)
A 		4.8
(0.8)
A 		6
(3)
A 		3
C 7.5
(2.3)
A 		8.2
(3)
A 		2.6
(-2.9)
A 		2.5
(-3)
A 		6
avr 6.4
(3) 		5
(0.5) 		3
(-3) 		3.2
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.5
(-0.2)
A 		6.5
(3)
A 		0.9
(-3)
A 		1.5
(-2.4)
A 		1.7
(-2.1)
A 		6
B 10.2
(2.6)
A 		3.6
(-2.3)
A 		8.3
(1.1)
A 		3.9
(-2.1)
A 		10.8
(3)
A 		2.7
(-3)
A 		8
C 6.4
(-0.8)
A 		12
(3)
A 		8.7
(0.8)
A 		3.9
(-2.5)
A 		3.1
(-3)
A 		8.6
(0.7)
A 		9
avr 5.8
(0.6) 		6.4
(1.3) 		7.8
(3) 		2.9
(-3) 		5.1
(-0.3) 		4.3
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1725
Sequence Type Exemplar sequence
Representative Public ID F15H9.3 NCBI
Target Description F15H9.3 /REP_DB=WormBase Gene ID /WP=CE17677 /TR=O62176 /GB=CAB04117.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060669(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060669 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-17) (sri-17) mRNA, complete cds. 10/11 None
GENEFINDER00000007325 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12152129:12155099:1 10/11 None
F15H9.3 ENSEMBL cdna:known chromosome:CEL140:I:12152129:12155099:1 gene:F15H9.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007305 2/11 Cross Hyb Matching Probes None
SNAP00000007306 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12152059-12155068(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-17
Ensembl F15H9.3
Entrez Gene 184550 Entrez gene
SwissProt O62176 EMBL-EBI
WormBase CE33619 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04117 Hypothetical protein F15H9.3 [Caenorhabditis elegans] ref|NP_493070.2| Serpentine Receptor, class I family member (sri-17) [Caenorhabditis elegans] 0.0
blast CAB04118 Hypothetical protein F15H9.4 [Caenorhabditis elegans] ref|NP_493071.1| Serpentine Receptor, class I family member (sri-16) [Caenorhabditis elegans] 1.0E-149
blast CAB04118 Hypothetical protein F15H9.4 [Caenorhabditis elegans] ref|NP_493071.1| Serpentine Receptor, class I family member (sri-16) [Caenorhabditis elegans] 1.0E-146
blast CAB04119 Hypothetical protein F15H9.2 [Caenorhabditis elegans] ref|NP_493072.1| Serpentine Receptor, class I family member (sri-15) [Caenorhabditis elegans] 1.0E-132
blast CAB04119 Hypothetical protein F15H9.2 [Caenorhabditis elegans] ref|NP_493072.1| Serpentine Receptor, class I family member (sri-15) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.6E-92
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.1E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493070.2 7 20-39,52-74,94-113,134-156,199-221,242-264,279-301
F15H9.3 7 20-39,52-74,94-113,134-156,199-221,242-264,279-301
GENEFINDER00000007325 7 20-39,52-74,94-113,134-156,215-237,258-280,295-317
Sequence
Target Sequence 
>C. ELEGANS:178738_AT
gtgtataactggccgcaatgctccagttggctagagcttgaagcttttgaagtctataat
tacgagtctaatcaatggctggcagctctcggagctgtggtttttggaactattttgcta
tcctactcgtacgcaatgacacttggcatccacactatgactattctacgaaaagttcga
aaatccatgtctcgtcagacatatcaaatgcacaaaaatgcacttttcagcttagttatg
caaattgtgattccgggggtgtttattatagtgccattgagtatttgtatgtttgtgatt
ataacagaggaagtttcgttgcaagaactagccactgacacaatgttcctcgtcggctct
cactcgatgtgctccagtgcagtcatgatattaagcaatcccaaatatcgatgtgtcctg
aagactaaaattctcaagttcactcagtgtgcaaagcaagatatatccgagctcggtgag
accgagtccggggttgagcccgagattgagtattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTATAACTGGCCGCAATGCTCCA 187 485 535 Antisense
ATCAATGGCTGGCAGCTCTCGGAGC 337 27 605 Antisense
GCTCTCGGAGCTGTGGTTTTTGGAA 679 299 619 Antisense
CTATTTTGCTATCCTACTCGTACGC 282 223 644 Antisense
GTACGCAATGACACTTGGCATCCAC 266 459 663 Antisense
GGCATCCACACTATGACTATTCTAC 125 537 679 Antisense
GTTGCAAGAACTAGCCACTGACACA 288 437 852 Antisense
CACTGACACAATGTTCCTCGTCGGC 534 197 867 Antisense
AAATTCTCAAGTTCACTCAGTGTGC 637 115 962 Antisense
GTGAGACCGAGTCCGGGGTTGAGCC 262 463 1010 Antisense
GGGTTGAGCCCGAGATTGAGTATTT 693 495 1025 Antisense
Sequence Source Affymetrix Proprietary Database