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[178737_at]

Description K08C7.6 /REP_DB=WormBase Gene ID /WP=CE06139 /TR=Q21315 /GB=CAA94362.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 80      6grp_total > 82      4grp_total > 09      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 769
1 2 3 4 range
A 101.5
(-3)
P 		142.9
(-2.6)
P 		159.6
(-2.5)
P 		742.1
(3)
P 		641
B 78
(-3)
P 		144
(-2.4)
P 		127
(-2.5)
P 		702.4
(3)
P 		624
C 82.6
(-3)
P 		134
(-2.6)
P 		151.4
(-2.5)
P 		846.8
(3)
P 		764
avr 87.4
(-3) 		140.3
(-2.5) 		146
(-2.5) 		763.8
(3) 		676

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 116.5
(-2.5)
P 		213.2
(0.2)
P 		309.5
(3)
P 		263
(1.7)
P 		231.3
(0.8)
P 		100.4
(-3)
P 		209
B 158.1
(-2.2)
P 		286.7
(2.6)
P 		225.4
(0.3)
P 		221.7
(0.2)
P 		296.7
(3)
P 		135.5
(-3)
P 		161
C 139.1
(-2.8)
P 		259.1
(1.4)
P 		133.5
(-3)
P 		305.3
(3)
P 		264.2
(1.6)
P 		155.4
(-2.2)
P 		172
avr 137.9
(-2.7) 		253
(2.5) 		222.8
(1.1) 		263.3
(3) 		264.1
(3) 		130.4
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 37
(-2.5)
P 		31
(-3)
P 		41.7
(-2.2)
P 		108.6
(3)
P 		78
B 24.9
(-3)
P 		35.6
(-2.5)
P 		29.4
(-2.8)
P 		149.7
(3)
P 		125
C 27.4
(-3)
P 		38.5
(-2.4)
P 		52.8
(-1.7)
P 		142.8
(3)
P 		115
avr 29.8
(-3) 		35
(-2.7) 		41.3
(-2.3) 		133.7
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 21.5
(-3)
P 		75.8
(3)
P 		67.4
(2.1)
P 		66.7
(2)
P 		69.8
(2.3)
P 		24.4
(-2.7)
P 		54
B 55
(-2.6)
P 		95.4
(0.8)
P 		54.7
(-2.6)
P 		58.7
(-2.3)
P 		120.5
(3)
P 		50.5
(-3)
P 		70
C 51.6
(-0.9)
P 		79.1
(2.3)
P 		34
(-3)
P 		61.4
(0.2)
P 		85.5
(3)
P 		52
(-0.9)
P 		52
avr 42.7
(-3) 		83.4
(2) 		52
(-1.8) 		62.3
(-0.6) 		91.9
(3) 		42.3
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9163
Sequence Type Exemplar sequence
Representative Public ID K08C7.6 NCBI
Target Description K08C7.6 /REP_DB=WormBase Gene ID /WP=CE06139 /TR=Q21315 /GB=CAA94362.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069572 NCBI Caenorhabditis elegans K08C7.6 (K08C7.6) mRNA, complete cds. 11/11 None
K08C7.6 ENSEMBL cdna:known chromosome:CEL140:IV:10684439:10685079:-1 gene:K08C7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034326 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034342 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10684444-10685085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08C7.6
Entrez Gene 187137 Entrez gene
SwissProt Q21315 EMBL-EBI
WormBase CE06139 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94362 Hypothetical protein K08C7.6 [Caenorhabditis elegans] emb|CAA94295.1| Hypothetical protein K08C7.6 [Caenorhabditis elegans] ref|NP_501973.1| K08C7.6 [Caenorhabditis elegans] 1.0E-98
blast CAE60759 Hypothetical protein CBG04446 [Caenorhabditis briggsae] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:178737_AT
tatctacaactcaaacacctaaaaagattaagtgggtcgttgagcatccgagtgctccat
tcacaattccaactggattcacaaagaatatggggagagatgagtatcagattgaaattg
gtggaaaagctaaattggatgacgataactttgatttcgaagcattgcaaaatacacaaa
agttgattatcaaacagccaacggagttcaaaaatggagtaaacgggaaacgacttttga
agttttttgctccagaactttacatggaggggacaaatgagatagattcggatagtttga
aagaattcggaaaggagtggctcgagggagatcgtattgttcgaaattgggaaatccatc
tttacgacgaaaaacaatcagagaatctttacttcgagaaaaatggaacaactcttcaac
ttactattgagaatggtcgttttaccgcatcaacttataagacgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTACAACTCAAACACCTAAAAA 569 659 41 Antisense
AAGTGGGTCGTTGAGCATCCGAGTG 198 159 70 Antisense
TGAGCATCCGAGTGCTCCATTCACA 396 569 81 Antisense
GATTATCAAACAGCCAACGGAGTTC 627 415 225 Antisense
GACTTTTGAAGTTTTTTGCTCCAGA 252 371 272 Antisense
GTTTTTTGCTCCAGAACTTTACATG 597 447 282 Antisense
GGAGTGGCTCGAGGGAGATCGTATT 170 517 354 Antisense
TTGGGAAATCCATCTTTACGACGAA 231 709 387 Antisense
GGAACAACTCTTCAACTTACTATTG 514 527 445 Antisense
GAGAATGGTCGTTTTACCGCATCAA 582 391 469 Antisense
TACCGCATCAACTTATAAGACGCCG 560 647 483 Antisense
Sequence Source Affymetrix Proprietary Database