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[178736_at]

Description C06B3.9 /REP_DB=WormBase Gene ID /WP=CE15594 /TR=O62028 /GB=CAB01122.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 19      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 21.9
(-1.5)
A 		11.6
(-3)
A 		15.8
(-2.4)
A 		53.9
(3)
A 		42
B 32.5
(3)
A 		24.6
(0.9)
A 		10.3
(-3)
A 		28.5
(1.9)
A 		22
C 8.5
(-3)
A 		42.1
(1.1)
P 		23.2
(-1.2)
A 		57.3
(3)
A 		49
avr 21
(-2.1) 		26.1
(-1.1) 		16.4
(-3) 		46.6
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 41.7
(3)
A 		26.2
(0.2)
A 		24
(-0.1)
A 		8.6
(-2.9)
A 		29.7
(0.9)
A 		7.9
(-3)
A 		34
B 41.5
(3)
M 		31.1
(-1.2)
A 		29.9
(-1.7)
A 		34.4
(0.1)
A 		41.3
(2.9)
P 		26.8
(-3)
A 		15
C 11.7
(-1.2)
A 		34.2
(3)
P 		2.4
(-3)
A 		9
(-1.8)
A 		11.5
(-1.3)
A 		25.2
(1.3)
A 		32
avr 31.6
(3) 		30.5
(2.5) 		18.8
(-2.4) 		17.3
(-3) 		27.5
(1.3) 		20
(-1.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8
(3)
A 		2.5
(-3)
A 		4.1
(-1.3)
A 		7.9
(2.9)
A 		6
B 10.4
(3)
A 		6.1
(-0.2)
A 		2.4
(-3)
A 		6.1
(-0.2)
A 		8
C 2.8
(-3)
A 		12.1
(3)
P 		8.1
(0.4)
A 		9.7
(1.5)
A 		9
avr 7.1
(1.4) 		6.9
(1) 		4.9
(-3) 		7.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.7
(1.7)
A 		9.3
(3)
A 		5.2
(-0.3)
A 		2.2
(-2.8)
A 		8.9
(2.7)
A 		1.9
(-3)
A 		7
B 14.4
(1.5)
M 		10.4
(-1)
A 		7.3
(-3)
A 		9.1
(-1.9)
A 		16.8
(3)
P 		10
(-1.3)
A 		10
C 4.3
(-0.7)
A 		10.4
(3)
P 		0.6
(-3)
A 		1.8
(-2.3)
A 		3.7
(-1.1)
A 		8.4
(1.8)
A 		10
avr 8.8
(1.7) 		10
(3) 		4.4
(-3) 		4.4
(-3) 		9.8
(2.8) 		6.8
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13880
Sequence Type Exemplar sequence
Representative Public ID C06B3.9 NCBI
Target Description C06B3.9 /REP_DB=WormBase Gene ID /WP=CE15594 /TR=O62028 /GB=CAB01122.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074052 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-252) (str-252) mRNA, complete cds. 11/11 None
C06B3.9 ENSEMBL cdna:known chromosome:CEL140:V:13919085:13920640:1 gene:C06B3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008253 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13919084-13920640(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-252
Ensembl C06B3.9
Entrez Gene 182294 Entrez gene
SwissProt O62028 EMBL-EBI
WormBase CE15594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01122 Hypothetical protein C06B3.9 [Caenorhabditis elegans] ref|NP_506453.1| Seven TM Receptor family member (str-252) [Caenorhabditis elegans] 1.0E-177
blast CAE66196 Hypothetical protein CBG11436 [Caenorhabditis briggsae] 8.0E-92
blast CAB01119 Hypothetical protein C06B3.10 [Caenorhabditis elegans] ref|NP_506454.1| Seven TM Receptor family member (str-250) [Caenorhabditis elegans] 8.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506453.1 7 10-29,50-72,87-109,128-147,199-221,248-270,285-305
C06B3.9 7 10-29,50-72,87-109,128-147,199-221,248-270,285-305
Sequence
Target Sequence 
>C. ELEGANS:178736_AT
gtgggaccgtatttttggccaatcggtaaagatgggaaaacgtatgtccaatggaagtca
atgtttggaattctgatcatgagcatagctatcactgtatcattttcaaccatttttgtg
tttggatataaatgctatcggaaaaccaacgagcttatccaaagcgcatctcaatcggaa
tcctttaacaaactacaaacccaattattctactcacttgttttacaaactcttattcca
gttgtcttaatgcatattcctgctacaattggattcggcgcttcattttttggtgtttct
tttgaatttcttggcgaaatgtgtgcattcactatttgtctgtatccagctttagatcca
cttcctaattttttcattatcaagacgtatcgggatgctattcttaaatatctacgaaaa
ttcaagagcataatattatgcaaaggggctacggtagacattgaaattgttgcaatgtcc
gatttaggatcggcttcaatgacgcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGACCGTATTTTTGGCCAATCG 574 487 547 Antisense
GCTATCACTGTATCATTTTCAACCA 277 303 634 Antisense
AAGCGCATCTCAATCGGAATCCTTT 262 149 708 Antisense
TTATTCTACTCACTTGTTTTACAAA 447 679 751 Antisense
ACTCTTATTCCAGTTGTCTTAATGC 182 101 775 Antisense
TACAATTGGATTCGGCGCTTCATTT 696 641 810 Antisense
GGCGCTTCATTTTTTGGTGTTTCTT 593 541 823 Antisense
GTGCATTCACTATTTGTCTGTATCC 170 481 869 Antisense
TGTATCCAGCTTTAGATCCACTTCC 220 561 887 Antisense
GATCCACTTCCTAATTTTTTCATTA 669 415 901 Antisense
TAGGATCGGCTTCAATGACGCCCAA 26 653 1031 Antisense
Sequence Source Affymetrix Proprietary Database