[Home] | [Total List]

[178734_at]

Description C08F8.5 /REP_DB=WormBase Gene ID /WP=CE05252 /TR=Q17830 /GB=CAA97426.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 0.5
(-3)
A 		3.3
(-2.5)
A 		1.4
(-2.8)
A 		36.1
(3)
A 		36
B 28.4
(3)
A 		15.2
(-0.3)
A 		5.3
(-2.8)
A 		4.5
(-3)
A 		24
C 1.1
(-3)
A 		14
(0)
A 		9.6
(-1)
A 		26.9
(3)
A 		26
avr 10
(-1.4) 		10.8
(-1.1) 		5.4
(-3) 		22.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 22.6
(1.6)
A 		27
(2.5)
A 		29.1
(3)
A 		1.5
(-3)
A 		26.9
(2.5)
A 		21.6
(1.4)
A 		28
B 5.7
(-3)
A 		22.2
(0.6)
A 		6.8
(-2.8)
A 		16.5
(-0.6)
A 		14.6
(-1.1)
A 		33.2
(3)
P 		28
C 0.6
(-3)
A 		12
(-0.2)
A 		12.4
(-0)
A 		1.8
(-2.7)
A 		9.4
(-0.8)
A 		24.6
(3)
P 		24
avr 9.6
(-2.1) 		20.4
(1.2) 		16.1
(-0.1) 		6.6
(-3) 		17
(0.1) 		26.5
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.2
(-3)
A 		0.7
(-2.4)
A 		0.4
(-2.8)
A 		5.3
(3)
A 		5
B 9.1
(3)
A 		3.8
(-0.9)
A 		1.2
(-2.9)
A 		1
(-3)
A 		8
C 0.4
(-3)
A 		4
(2.3)
A 		3.3
(1.2)
A 		4.5
(3)
A 		4
avr 3.2
(1.8) 		2.8
(0.6) 		1.6
(-3) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.2
(-0.5)
A 		9.6
(3)
A 		6.3
(0.8)
A 		0.4
(-3)
A 		8.1
(2)
A 		5.3
(0.2)
A 		9
B 2
(-2.8)
A 		7.4
(0.2)
A 		1.7
(-3)
A 		4.4
(-1.5)
A 		6
(-0.6)
A 		12.4
(3)
P 		11
C 0.2
(-3)
A 		3.7
(-0.4)
A 		3.2
(-0.8)
A 		0.4
(-2.9)
A 		3
(-0.9)
A 		8.2
(3)
P 		8
avr 2.1
(-2.7) 		6.9
(1.5) 		3.7
(-1.3) 		1.7
(-3) 		5.7
(0.5) 		8.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9695
Sequence Type Exemplar sequence
Representative Public ID C08F8.5 NCBI
Target Description C08F8.5 /REP_DB=WormBase Gene ID /WP=CE05252 /TR=Q17830 /GB=CAA97426.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069691 NCBI Caenorhabditis elegans C08F8.5 (C08F8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000012991 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11159663:11164260:-1 11/11 None
C08F8.5 ENSEMBL cdna:known chromosome:CEL140:IV:11159663:11162501:-1 gene:C08F8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11159668-11162507(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F8.5
Entrez Gene 182415 Entrez gene
SwissProt Q17830 EMBL-EBI
WormBase CE05252 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97426 Hypothetical protein C08F8.5 [Caenorhabditis elegans] ref|NP_502092.1| C08F8.5 [Caenorhabditis elegans] 0.0
blast CAA97422 Hypothetical protein C08F8.6 [Caenorhabditis elegans] ref|NP_502093.1| C08F8.6 [Caenorhabditis elegans] 0.0
blast CAA97426 Hypothetical protein C08F8.5 [Caenorhabditis elegans] ref|NP_502092.1| C08F8.5 [Caenorhabditis elegans] 1.0E-180
blast CAE68129 Hypothetical protein CBG13774 [Caenorhabditis briggsae] 1.0E-174
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 7.0E-11
blast CAB01176 Hypothetical protein F38H4.2 [Caenorhabditis elegans] ref|NP_502240.1| F38H4.2 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-4
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-19
Sequence
Target Sequence 
>C. ELEGANS:178734_AT
gagtttattgtgttgtctaattgcacgtatgaaacctcacagtctattcacaaatttctt
atttgtaataatgcgacactattctctaatgttttttctccatataatctgaatgattta
ctcatatccaattgccaaaaccttctcgttaacgttgatagaggcaacatttttttggga
caagatgtgaacaaatttttaaagcactggatacgtggatcaaatgtaacactcaaatgt
ttggcattagaagctccgatgaatatggaaagagaacttgttatagaaacaatattagaa
ggaattgattacaaggttaaagaagaggaggtgtcagtttataagaaaatgcttgatatc
ttcaatcacggaaatccttcaattaccaaaattcgtggttttcgtattacacgattcgat
ggtacaaattgcgatgttgtaatcagaacatgcaatccgagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTATTGTGTTGTCTAATTGCA 458 397 1273 Antisense
CTAATTGCACGTATGAAACCTCACA 134 223 1289 Antisense
AAACCTCACAGTCTATTCACAAATT 648 125 1304 Antisense
GTAATAATGCGACACTATTCTCTAA 276 463 1337 Antisense
TATTCTCTAATGTTTTTTCTCCATA 201 665 1352 Antisense
GATTTACTCATATCCAATTGCCAAA 305 429 1387 Antisense
TGCCAAAACCTTCTCGTTAACGTTG 576 555 1405 Antisense
AATGTTTGGCATTAGAAGCTCCGAT 456 163 1508 Antisense
AATGCTTGATATCTTCAATCACGGA 148 167 1620 Antisense
ATCACGGAAATCCTTCAATTACCAA 31 27 1637 Antisense
GTAATCAGAACATGCAATCCGAGTG 343 463 1711 Antisense
Sequence Source Affymetrix Proprietary Database