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[178733_at]

Description R07B7.2 /REP_DB=WormBase Gene ID /WP=CE12520 /TR=P90834 /GB=CAB04083.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 11
(-3)
A 		86.6
(3)
A 		86.7
(3)
A 		59.4
(0.8)
A 		76
B 38.1
(-3)
A 		77.9
(0.1)
A 		114.4
(3)
A 		76.6
(0)
A 		76
C 12.4
(-3)
A 		47
(-1.1)
A 		69.7
(0.1)
A 		121.8
(3)
A 		109
avr 20.5
(-3) 		70.5
(1.3) 		90.3
(3) 		85.9
(2.6) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 21.9
(-3)
A 		28.8
(-2.9)
A 		20.3
(-3)
A 		100.4
(-1.7)
A 		279.2
(1.3)
P 		385.7
(3)
P 		365
B 9.4
(-3)
A 		43.9
(-2.4)
A 		86.5
(-1.7)
A 		154.9
(-0.5)
A 		226.2
(0.7)
P 		357.8
(3)
P 		348
C 15.8
(-2.9)
A 		60.9
(-2.2)
A 		11.2
(-3)
A 		211.1
(0.4)
A 		213.1
(0.4)
P 		364.2
(3)
P 		353
avr 15.7
(-3) 		44.5
(-2.5) 		39.3
(-2.6) 		155.5
(-0.6) 		239.5
(0.8) 		369.2
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4
(-3)
A 		18.8
(1.7)
A 		22.7
(3)
A 		8.7
(-1.5)
A 		19
B 12.2
(-3)
A 		19.2
(-0.1)
A 		26.5
(3)
A 		16.3
(-1.3)
A 		14
C 4.1
(-3)
A 		13.5
(-0.2)
A 		24.3
(3)
A 		20.5
(1.9)
A 		20
avr 6.8
(-3) 		17.2
(0.5) 		24.5
(3) 		15.2
(-0.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 4
(-3)
A 		10.2
(-2.6)
A 		4.4
(-3)
A 		25.5
(-1.6)
A 		84.2
(2.4)
P 		93.9
(3)
P 		90
B 3.3
(-3)
A 		14.6
(-2.5)
A 		21
(-2.2)
A 		41
(-1.3)
A 		91.9
(1.1)
P 		133.4
(3)
P 		130
C 5.9
(-2.8)
A 		18.6
(-2.2)
A 		2.9
(-3)
A 		42.5
(-1)
A 		69
(0.3)
P 		121.9
(3)
P 		119
avr 4.4
(-3) 		14.5
(-2.5) 		9.4
(-2.7) 		36.3
(-1.3) 		81.7
(1.1) 		116.4
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13831
Sequence Type Exemplar sequence
Representative Public ID R07B7.2 NCBI
Target Description R07B7.2 /REP_DB=WormBase Gene ID /WP=CE12520 /TR=P90834 /GB=CAB04083.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073620 NCBI Caenorhabditis elegans R07B7.2 (R07B7.2) mRNA, complete cds. 11/11 None
SNAP00000025563 ENSEMBL cdna:SNAP chromosome:CEL140:V:12059367:12060695:-1 11/11 None
GENEFINDER00000025564 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12059367:12060695:-1 11/11 None
R07B7.2 ENSEMBL cdna:known chromosome:CEL140:V:12059367:12062340:-1 gene:R07B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12059366-12062335(-) 92.45 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B7.2
Entrez Gene 179654 Entrez gene
SwissProt Q95QM1 EMBL-EBI
WormBase CE38533 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00127 Hypothetical protein R07B7.2 [Caenorhabditis elegans] emb|CAB04083.3| Hypothetical protein R07B7.2 [Caenorhabditis elegans] ref|NP_506021.2| R07B7.2 [Caenorhabditis elegans] 0.0
blast CAB00127 Hypothetical protein R07B7.2 [Caenorhabditis elegans] emb|CAB04083.3| Hypothetical protein R07B7.2 [Caenorhabditis elegans] ref|NP_506021.2| R07B7.2 [Caenorhabditis elegans] 1.0E-152
blast CAB00127 Hypothetical protein R07B7.2 [Caenorhabditis elegans] emb|CAB04083.3| Hypothetical protein R07B7.2 [Caenorhabditis elegans] ref|NP_506021.2| R07B7.2 [Caenorhabditis elegans] 1.0E-148
Sequence
Target Sequence 
>C. ELEGANS:178733_AT
cgccgatttctcagccagaagtcaatgttaatgaaaaccaaatcgttcccgaagaaaccg
aaaggcttgaggctgatcttgaaatcgagaatactgtcgatgcgatcatcgtaacagatg
ttggatccgtcaaccaagctgtatctggagtcaattcgattgctcgagaaacagaggaaa
tcaataatcaagatgtgcgaaatgagacaccagtggaagatttcggatccataatatcag
cgatttctataactgaaaatagaaacgagtctccaatgccaagcgcatctgaaaccgatg
acacatctccacatacctcgcgctcaagatatggatcttctgttgccatttccaccggta
tgaaaagagcacgactcgaaccatcacaatctccaccgggctcatctcgcaaaaattcaa
ggaatgagacgaccaagaaaaattcaaaaactccttcttctacaattgataaagaaccta
cttcatcaaagaggacaagaaaagctccagcgcgctacgaagcggaatggaacgccgaac
aaggaggcgatactcgtcgtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCGATTTCTCAGCCAGAAGTCAA 254 257 1538 Antisense
TGGATCCGTCAACCAAGCTGTATCT 314 549 1659 Antisense
GTCTCCAATGCCAAGCGCATCTGAA 494 469 1806 Antisense
GAAACCGATGACACATCTCCACATA 199 359 1828 Antisense
ATACCTCGCGCTCAAGATATGGATC 431 23 1850 Antisense
ATGGATCTTCTGTTGCCATTTCCAC 672 51 1868 Antisense
AGAGCACGACTCGAACCATCACAAT 31 71 1903 Antisense
CGGGCTCATCTCGCAAAAATTCAAG 211 245 1934 Antisense
AAAAACTCCTTCTTCTACAATTGAT 681 127 1983 Antisense
GACAAGAAAAGCTCCAGCGCGCTAC 306 365 2031 Antisense
CAAGGAGGCGATACTCGTCGTGCAA 683 183 2077 Antisense
Sequence Source Affymetrix Proprietary Database