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[178732_at]

Description K07A1.1 /REP_DB=WormBase Gene ID /WP=CE18854 /TR=P90908 /GB=CAB03174.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 84.8
(-3)
P 		131.3
(-1.7)
P 		205.8
(0.5)
P 		293.9
(3)
P 		209
B 92.8
(-3)
P 		117.5
(-2.6)
P 		174.2
(-1.6)
P 		435.1
(3)
P 		342
C 112.8
(-3)
P 		137.9
(-2.5)
P 		209
(-1)
P 		396.6
(3)
P 		284
avr 96.8
(-3) 		128.9
(-2.3) 		196.3
(-0.9) 		375.2
(3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 890
1 2 3 4 5 6 range
A 138
(-2.8)
P 		105.6
(-3)
P 		183.5
(-2.5)
P 		403.3
(-0.9)
P 		677.3
(1)
P 		963.3
(3)
P 		858
B 73
(-3)
P 		104.1
(-2.8)
P 		184.2
(-2.1)
P 		318.3
(-1)
P 		702.8
(2)
P 		826.6
(3)
P 		754
C 103.9
(-3)
P 		181.3
(-2.4)
P 		201.1
(-2.3)
P 		379.4
(-0.9)
P 		610.2
(0.8)
P 		905.6
(3)
P 		802
avr 105
(-3) 		130.3
(-2.8) 		189.6
(-2.4) 		367
(-1) 		663.4
(1.2) 		898.5
(3) 		794
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 30.9
(-2.4)
P 		28.5
(-3)
P 		53.8
(3)
P 		43
(0.4)
P 		25
B 29.6
(-2.9)
P 		29
(-3)
P 		40.4
(-1.9)
P 		92.7
(3)
P 		64
C 37.3
(-3)
P 		39.6
(-2.6)
P 		72.8
(3)
P 		66.9
(2)
P 		36
avr 32.6
(-3) 		32.4
(-3) 		55.7
(1) 		67.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 25.4
(-3)
P 		37.6
(-2.6)
P 		40
(-2.6)
P 		102.3
(-0.8)
P 		204.4
(2.1)
P 		234.5
(3)
P 		209
B 25.4
(-3)
P 		34.6
(-2.8)
P 		44.7
(-2.6)
P 		84.3
(-1.8)
P 		285.5
(2.5)
P 		308.2
(3)
P 		283
C 38.5
(-3)
P 		55.3
(-2.6)
P 		51.2
(-2.7)
P 		76.3
(-2.1)
P 		197.4
(0.6)
P 		303.2
(3)
P 		265
avr 29.8
(-3) 		42.5
(-2.7) 		45.3
(-2.6) 		87.6
(-1.6) 		229.1
(1.7) 		282
(3) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1754
Sequence Type Exemplar sequence
Representative Public ID K07A1.1 NCBI
Target Description K07A1.1 /REP_DB=WormBase Gene ID /WP=CE18854 /TR=P90908 /GB=CAB03174.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060139 NCBI Caenorhabditis elegans K07A1.1 (K07A1.1) mRNA, complete cds. 11/11 None
SNAP00000041841 ENSEMBL cdna:SNAP chromosome:CEL140:I:9590004:9590702:-1 11/11 None
GENEFINDER00000041872 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9590004:9590702:-1 11/11 None
K07A1.1 ENSEMBL cdna:known chromosome:CEL140:I:9590004:9591584:-1 gene:K07A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9589934-9591515(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.1
Entrez Gene 187080 Entrez gene
SwissProt P90908 EMBL-EBI
WormBase CE18854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03174 Hypothetical protein K07A1.1 [Caenorhabditis elegans] ref|NP_492540.1| K07A1.1 [Caenorhabditis elegans] 0.0
blast CAB03174 Hypothetical protein K07A1.1 [Caenorhabditis elegans] ref|NP_492540.1| K07A1.1 [Caenorhabditis elegans] 1.0E-101
blast CAE60172 Hypothetical protein CBG03726 [Caenorhabditis briggsae] 2.0E-46
blast CAE60172 Hypothetical protein CBG03726 [Caenorhabditis briggsae] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492540.1 8 47-66,70-87,99-118,138-160,229-251,256-278,285-304,324-341
K07A1.1 8 47-66,70-87,99-118,138-160,229-251,256-278,285-304,324-341
SNAP00000041841 4 47-69,74-96,103-122,142-159
GENEFINDER00000041872 4 47-69,74-96,103-122,142-159
Sequence
Target Sequence 
>C. ELEGANS:178732_AT
atgcgcggtatgtttctggttttcaatgagccatctgatggaaacatcgaaaagaagttg
gatgtgagctcgcaaagatgcgatgtctacccagctcatgtctacgttccccagatgaac
aaaaaagcaaaatcgctctacttgctgctctgtattctcgatacactcgttcacatcgcc
agtattggtggtagaatctttctgaaaccagatcactacgccttgtacatctttccagga
atcatggaagtatcattcctcgttacattcgccacaaaatatattcgattcctccatctt
caaatgatatatctgttcgctcacacgattctctctttcattttcctgtttgccaatatc
gttcccaatggaaaagaatcattgcttgttgagttcgagcttccttctctcaactcgaac
actttgattgagtctgtactggccattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGCGGTATGTTTCTGGTTTTCA 92 41 562 Antisense
GCAAAGATGCGATGTCTACCCAGCT 482 317 633 Antisense
GTATTCTCGATACACTCGTTCACAT 293 453 713 Antisense
TGAAACCAGATCACTACGCCTTGTA 129 573 764 Antisense
TACGCCTTGTACATCTTTCCAGGAA 34 649 778 Antisense
AAGTATCATTCCTCGTTACATTCGC 458 155 809 Antisense
AATATATTCGATTCCTCCATCTTCA 15 175 839 Antisense
TATATCTGTTCGCTCACACGATTCT 637 661 869 Antisense
TTTCCTGTTTGCCAATATCGTTCCC 30 671 903 Antisense
TGCTTGTTGAGTTCGAGCTTCCTTC 698 577 944 Antisense
GATTGAGTCTGTACTGGCCATTTTC 223 435 987 Antisense
Sequence Source Affymetrix Proprietary Database