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[178731_at]

Description T20D3.6 /REP_DB=WormBase Gene ID /WP=CE03674 /TR=O01257 /GB=CAA92488.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 57      6grp_total > 74      4grp_total > 02      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7560
1 2 3 4 range
A 2014.5
(-2.7)
P 		1666.5
(-3)
P 		1960.5
(-2.7)
P 		8096.7
(3)
P 		6430
B 1812.4
(-3)
P 		2005.8
(-2.8)
P 		1814
(-3)
P 		9226.2
(3)
P 		7414
C 1985.3
(-2.8)
P 		1806.8
(-3)
P 		1796.1
(-3)
P 		8961.3
(3)
P 		7165
avr 1937.4
(-2.9) 		1826.4
(-3) 		1856.9
(-3) 		8761.4
(3) 		6935

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1395
1 2 3 4 5 6 range
A 1880.3
(-3)
P 		2059.8
(-1.6)
P 		2458.6
(1.5)
P 		2656.6
(3)
P 		2279
(0.1)
P 		2525.4
(2)
P 		776
B 2051.5
(-3)
P 		2388.8
(-0.7)
P 		2429.3
(-0.4)
P 		2265.5
(-1.5)
P 		2915
(3)
P 		2876.6
(2.7)
P 		864
C 2246.6
(-1.7)
P 		1962.1
(-3)
P 		2445.1
(-0.8)
P 		3274.8
(3)
P 		2498.7
(-0.5)
P 		2387
(-1.1)
P 		1313
avr 2059.5
(-3) 		2136.9
(-2.3) 		2444.3
(0.4) 		2732.3
(3) 		2564.2
(1.5) 		2596.3
(1.8) 		673
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1604
1 2 3 4 range
A 733.5
(-0.3)
P 		361.8
(-3)
P 		512.5
(-1.9)
P 		1185.2
(3)
P 		823
B 577.9
(-2.4)
P 		495.4
(-2.7)
P 		420.3
(-3)
P 		1966.1
(3)
P 		1546
C 657.2
(-2.2)
P 		519.5
(-3)
P 		626
(-2.4)
P 		1511
(3)
P 		992
avr 656.2
(-1.9) 		458.9
(-3) 		519.6
(-2.7) 		1554.1
(3) 		1095

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 346.6
(-3)
P 		732.6
(3)
P 		535.4
(-0.1)
P 		673.8
(2.1)
P 		687.7
(2.3)
P 		614.9
(1.2)
P 		386
B 713.8
(-1.7)
P 		795.1
(-0.9)
P 		589.9
(-3)
P 		600.1
(-2.9)
P 		1184.3
(3)
P 		1072.7
(1.9)
P 		594
C 832.7
(3)
P 		598.7
(-3)
P 		622.3
(-2.4)
P 		658.6
(-1.5)
P 		808.5
(2.4)
P 		799.1
(2.1)
P 		234
avr 631
(-2.1) 		708.8
(-0.6) 		582.5
(-3) 		644.2
(-1.8) 		893.5
(3) 		828.9
(1.8) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178731_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9165
Sequence Type Exemplar sequence
Representative Public ID T20D3.6 NCBI
Target Description T20D3.6 /REP_DB=WormBase Gene ID /WP=CE03674 /TR=O01257 /GB=CAA92488.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069242 NCBI Caenorhabditis elegans T20D3.6 (T20D3.6) mRNA, complete cds. 11/11 None
SNAP00000040161 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9338717:9339275:-1 11/11 None
GENEFINDER00000040170 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9338717:9339275:-1 11/11 None
T20D3.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:9338574:9339282:-1 gene:T20D3.6 11/11 None
T20D3.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:9338591:9339284:-1 gene:T20D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9338722-9339281(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20D3.6
Entrez Gene 177762 Entrez gene
SwissProt O01257 EMBL-EBI
WormBase CE03674 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92488 Hypothetical protein T20D3.6 [Caenorhabditis elegans] ref|NP_501643.1| T20D3.6 [Caenorhabditis elegans] 2.0E-77
blast CAA92488 Hypothetical protein T20D3.6 [Caenorhabditis elegans] ref|NP_501643.1| T20D3.6 [Caenorhabditis elegans] 9.0E-76
blast CAE74043 Hypothetical protein CBG21694 [Caenorhabditis briggsae] 1.0E-68
blast CAE74043 Hypothetical protein CBG21694 [Caenorhabditis briggsae] 8.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR007667 EMBL-EBI Hypoxia induced protein conserved region 7.3E-32
Pfam IPR007667 EMBL-EBI Hypoxia induced protein conserved region 7.3E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501643.1 2 55-77,92-114
T20D3.6.2 2 55-77,92-114
T20D3.6.1 2 55-77,92-114
SNAP00000040161 2 55-77,92-114
GENEFINDER00000040170 2 59-81,96-118
Sequence
Target Sequence 
>C. ELEGANS:178731_AT
gcaagtattccattgatcccacaagatatgtctggcggttctcgtggtcaaacagcttct
acaacagctctccagaaggcactcaataatccacttgtacctcttggaatgcttgccact
actggatgccttattggaatgatggttgccacattgcgtcgaagttcccgtggtgctcaa
tacttcatgcgtggacgtgtagttgctcaaggattcactgtcgctgctcttgtgggagga
gctgtgatgtttggaatcggtgcacccacagaagcggctctgcgagctcctgggaagggt
caagctaatattgtttcactgactccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTATTCCATTGATCCCACAAG 641 321 88 Antisense
CAAGATATGTCTGGCGGTTCTCGTG 372 185 109 Antisense
GGTTCTCGTGGTCAAACAGCTTCTA 220 507 124 Antisense
GGCACTCAATAATCCACTTGTACCT 139 525 165 Antisense
CTTGCCACTACTGGATGCCTTATTG 246 219 199 Antisense
ATGATGGTTGCCACATTGCGTCGAA 156 47 226 Antisense
GGTGCTCAATACTTCATGCGTGGAC 591 501 259 Antisense
ATGCGTGGACGTGTAGTTGCTCAAG 402 37 274 Antisense
TTGCTCAAGGATTCACTGTCGCTGC 275 701 290 Antisense
GTTTGGAATCGGTGCACCCACAGAA 604 451 336 Antisense
CTAATATTGTTTCACTGACTCCGCC 607 227 392 Antisense
Sequence Source Affymetrix Proprietary Database