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[178730_at]

Description C55A1.9 /REP_DB=WormBase Gene ID /WP=CE08995 /TR=O17715 /GB=CAB04009.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 72.3
(-0.2)
A 		93.5
(3)
A 		62.5
(-1.7)
A 		54.3
(-3)
A 		39
B 10.8
(-3)
A 		88.6
(3)
A 		26.5
(-1.8)
A 		35.5
(-1.1)
A 		78
C 7.1
(-3)
A 		82.1
(3)
A 		12.3
(-2.6)
A 		19
(-2)
A 		75
avr 30.1
(-3) 		88.1
(3) 		33.8
(-2.6) 		36.3
(-2.4) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 29
(-0.4)
A 		54.8
(3)
A 		13.7
(-2.5)
A 		9.6
(-3)
A 		10.5
(-2.9)
A 		21
(-1.5)
A 		45
B 49.1
(0.2)
A 		76.9
(2.9)
A 		77.6
(3)
A 		54
(0.7)
A 		63.3
(1.6)
A 		17.1
(-3)
A 		61
C 54.5
(1.1)
A 		27.8
(-1.4)
A 		11.1
(-3)
A 		74.7
(3)
A 		20.6
(-2.1)
A 		58.7
(1.5)
A 		64
avr 44.2
(0.5) 		53.2
(3) 		34.1
(-2.3) 		46.1
(1) 		31.5
(-3) 		32.3
(-2.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26.3
(3)
A 		20.3
(1)
A 		16.3
(-0.3)
A 		7.9
(-3)
A 		18
B 3.4
(-3)
A 		21.9
(3)
A 		6.1
(-2.1)
A 		7.6
(-1.6)
A 		19
C 2.3
(-3)
A 		23.6
(3)
A 		4.3
(-2.4)
A 		3.2
(-2.7)
A 		21
avr 10.7
(-1.3) 		21.9
(3) 		8.9
(-2) 		6.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.3
(-2)
A 		19.5
(3)
A 		3
(-2.8)
A 		2.4
(-3)
A 		3.2
(-2.7)
A 		5.1
(-2.1)
A 		17
B 17.1
(0.3)
A 		25.6
(3)
A 		18.8
(0.9)
A 		14.3
(-0.5)
A 		25.7
(3)
A 		6.4
(-3)
A 		19
C 20.2
(3)
A 		8.5
(-1)
A 		2.8
(-3)
A 		15
(1.2)
A 		6.7
(-1.7)
A 		19.7
(2.8)
A 		17
avr 14.2
(0.7) 		17.9
(3) 		8.2
(-3) 		10.6
(-1.5) 		11.9
(-0.7) 		10.4
(-1.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13821
Sequence Type Exemplar sequence
Representative Public ID C55A1.9 NCBI
Target Description C55A1.9 /REP_DB=WormBase Gene ID /WP=CE08995 /TR=O17715 /GB=CAB04009.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074486 NCBI Caenorhabditis elegans C55A1.9 (C55A1.9) mRNA, complete cds. 11/11 None
SNAP00000022793 ENSEMBL cdna:SNAP chromosome:CEL140:V:15629250:15629910:1 11/11 None
GENEFINDER00000022804 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15629250:15629910:1 11/11 None
C55A1.9 ENSEMBL cdna:known chromosome:CEL140:V:15629036:15629822:1 gene:C55A1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15629035-15629822(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55A1.9
Entrez Gene 183830 Entrez gene
WormBase CE08995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04009 Hypothetical protein C55A1.9 [Caenorhabditis elegans] ref|NP_506887.1| C55A1.9 [Caenorhabditis elegans] 1.0E-110
blast CAB04009 Hypothetical protein C55A1.9 [Caenorhabditis elegans] ref|NP_506887.1| C55A1.9 [Caenorhabditis elegans] 3.0E-98
blast AAC17012 Hypothetical protein ZK380.4 [Caenorhabditis elegans] ref|NP_508303.1| ZK380.4 [Caenorhabditis elegans] 2.0E-34
blast AAC17012 Hypothetical protein ZK380.4 [Caenorhabditis elegans] ref|NP_508303.1| ZK380.4 [Caenorhabditis elegans] 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:178730_AT
atacgagcctttaaatcctcttcctaactatattccacctcgagcgtcaccaccatcgcc
gccaaaaatgaatgggaaatatagccttccacctctcacaatgtcacctctcgtggagcc
aagtgtcactggtagctttgaccacggaactactggattgaaaaaaagcgcgtcaattga
tggaattttcaagcgaaaacctgttgacccagccgaatattttgcccaattcaaagtgcc
cagctatctcaagacatatgaacccccagttcccttgttcacaattgttcgccgttccga
gtctctaaatgcgcgaagaacagaatctcggagaaacgaggatatcccgaagctcgcaaa
taacttatggagtaacgatacagcggatgacgttgtttatagaatcctaacaggcggagg
ttggggtcgcgatgagctgcctccaccggctccgagggttcaacgaccgaagaatggaca
gaatcgtcacctgtggcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGAGCCTTTAAATCCTCTTCCT 567 23 141 Antisense
AAATCCTCTTCCTAACTATATTCCA 83 119 153 Antisense
TCTCACAATGTCACCTCTCGTGGAG 300 613 234 Antisense
GTGTCACTGGTAGCTTTGACCACGG 571 483 263 Antisense
TGACCCAGCCGAATATTTTGCCCAA 244 571 345 Antisense
AAAGTGCCCAGCTATCTCAAGACAT 24 123 373 Antisense
GTTCCCTTGTTCACAATTGTTCGCC 282 441 409 Antisense
CGCCGTTCCGAGTCTCTAAATGCGC 491 257 430 Antisense
GAGGATATCCCGAAGCTCGCAAATA 504 403 478 Antisense
GCTCCGAGGGTTCAACGACCGAAGA 605 231 589 Antisense
GGACAGAATCGTCACCTGTGGCACA 330 525 616 Antisense
Sequence Source Affymetrix Proprietary Database