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[178729_at]

Description R06C7.2 /REP_DB=WormBase Gene ID /WP=CE06245 /TR=Q21772 /GB=CAA95841.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 9.4
(-3)
A 		13.9
(-2.7)
A 		17.1
(-2.4)
A 		88.2
(3)
A 		79
B 13.3
(-2.4)
A 		3.8
(-3)
A 		3.1
(-3)
A 		102
(3)
A 		99
C 9.7
(-1.4)
A 		2.2
(-3)
A 		20.7
(0.9)
A 		30.8
(3)
A 		29
avr 10.8
(-2.6) 		6.6
(-3) 		13.6
(-2.4) 		73.7
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 13.2
(-2.5)
A 		13.2
(-2.5)
A 		2
(-3)
A 		13.3
(-2.5)
A 		126.1
(2.7)
A 		133
(3)
A 		131
B 12.6
(-2.6)
A 		7.5
(-2.8)
A 		10.2
(-2.7)
A 		1.8
(-3)
A 		108.1
(0.7)
A 		176.5
(3)
P 		175
C 12
(-3)
A 		17.7
(-2.7)
A 		18.3
(-2.7)
A 		19.1
(-2.7)
A 		67.4
(-0.5)
A 		143.4
(3)
A 		131
avr 12.6
(-2.9) 		12.8
(-2.9) 		10.2
(-3) 		11.4
(-2.9) 		100.5
(0.8) 		151
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 3.4
(-2.8)
A 		3
(-3)
A 		4.5
(-2.1)
A 		12.9
(3)
A 		10
B 4.2
(-2)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		21.7
(3)
A 		21
C 3.2
(-0.6)
A 		0.6
(-3)
A 		7.2
(3)
A 		5.2
(1.2)
A 		7
avr 3.6
(-1.9) 		1.5
(-3) 		4.1
(-1.7) 		13.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		4.7
(-2.3)
A 		0.4
(-3)
A 		3.4
(-2.5)
A 		38
(3)
A 		32.4
(2.1)
A 		38
B 4.4
(-2.6)
A 		2.5
(-2.8)
A 		2.5
(-2.8)
A 		0.5
(-3)
A 		43.9
(1)
A 		65.8
(3)
P 		65
C 4.5
(-2.9)
A 		5.4
(-2.8)
A 		4.6
(-2.9)
A 		3.8
(-3)
A 		21.8
(-0.6)
A 		48
(3)
A 		44
avr 3.8
(-2.8) 		4.2
(-2.8) 		2.5
(-3) 		2.6
(-3) 		34.6
(1.2) 		48.7
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1683
Sequence Type Exemplar sequence
Representative Public ID R06C7.2 NCBI
Target Description R06C7.2 /REP_DB=WormBase Gene ID /WP=CE06245 /TR=Q21772 /GB=CAA95841.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059643(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059643 NCBI Caenorhabditis elegans R06C7.2 (R06C7.2) mRNA, complete cds. 10/11 None
GENEFINDER00000036129 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7241484:7242449:-1 10/11 None
R06C7.2 ENSEMBL cdna:known chromosome:CEL140:I:7241791:7242632:-1 gene:R06C7.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036109 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7241721-7242563(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06C7.2
Entrez Gene 187640 Entrez gene
SwissProt Q21772 EMBL-EBI
WormBase CE36661 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95841 Hypothetical protein R06C7.2 [Caenorhabditis elegans] ref|NP_492044.2| R06C7.2 [Caenorhabditis elegans] 1.0E-131
blast CAA95841 Hypothetical protein R06C7.2 [Caenorhabditis elegans] ref|NP_492044.2| R06C7.2 [Caenorhabditis elegans] 6.0E-93
blast AAF60414 Paz/piwi domain-containing protein 2 [Caenorhabditis elegans] ref|NP_491535.1| PAZ/PIWI domain-containing family member (ppw-2) [Caenorhabditis elegans] 1.0E-18
blast AAF60414 Paz/piwi domain-containing protein 2 [Caenorhabditis elegans] ref|NP_491535.1| PAZ/PIWI domain-containing family member (ppw-2) [Caenorhabditis elegans] 2.0E-18
blast CAB04524 Hypothetical protein F58G1.1 [Caenorhabditis elegans] ref|NP_496751.1| F58G1.1 [Caenorhabditis elegans] 2.0E-16
blast CAB04524 Hypothetical protein F58G1.1 [Caenorhabditis elegans] ref|NP_496751.1| F58G1.1 [Caenorhabditis elegans] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178729_AT
atgccaactgtcgaagctagccaattttgaggaaaataatcgaaagaagcttcaagatac
tgaacgcgagaacaagaagcttcgaaatttaatcaattcccttgaactgaaacttgtcag
ttctcctgaaaatctacctcttcaaatccttttttttttaatctcggaaaatgacgaatt
gctcgaacgtgtatttcacttccattgtgccaccttcaccaaattgtcagacttccaact
tcttttttttccaacaccaatgtatgttgcaaatgagtacgcgaagagtggtcgtaattt
gtggaatgaagccatcattgcggatgcaattcccgaagtttctggaccagaggcagctcg
tatgaagcagattaccgatagcatcaaatacaaggaatccggcttcctgatcgaccgtcg
tgtcaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAACTGTCGAAGCTAGCCAAT 341 41 246 Antisense
TCAGTTCTCCTGAAAATCTACCTCT 684 621 362 Antisense
GAAAATCTACCTCTTCAAATCCTTT 705 351 373 Antisense
GACGAATTGCTCGAACGTGTATTTC 49 381 418 Antisense
GTGTATTTCACTTCCATTGTGCCAC 108 487 434 Antisense
CATTGTGCCACCTTCACCAAATTGT 666 217 448 Antisense
AATTGTCAGACTTCCAACTTCTTTT 452 175 467 Antisense
GCAATTCCCGAAGTTTCTGGACCAG 101 323 571 Antisense
TTCTGGACCAGAGGCAGCTCGTATG 171 693 585 Antisense
CAAGGAATCCGGCTTCCTGATCGAC 9 181 636 Antisense
TCCTGATCGACCGTCGTGTCAATGC 399 593 650 Antisense
Sequence Source Affymetrix Proprietary Database