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[178728_at]

Description R01E6.2 /REP_DB=WormBase Gene ID /WP=CE03519 /TR=Q21619 /GB=CAA92188.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 410
1 2 3 4 range
A 8.4
(-3)
A 		351
(3)
P 		306
(2.2)
P 		20.4
(-2.8)
A 		343
B 26.9
(-2.8)
A 		417.9
(3)
P 		294.6
(1.2)
P 		11.5
(-3)
A 		406
C 8.3
(-3)
A 		407.1
(3)
P 		317.7
(1.7)
P 		114
(-1.4)
A 		399
avr 14.5
(-3) 		392
(3) 		306.1
(1.6) 		48.6
(-2.5) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 148.1
(-2.6)
A 		293.2
(3)
P 		217.7
(0.1)
P 		292
(3)
P 		251.2
(1.4)
P 		138.3
(-3)
P 		155
B 61.1
(-3)
A 		288.2
(3)
P 		176
(0)
P 		217.1
(1.1)
P 		225.4
(1.3)
P 		98.7
(-2)
P 		227
C 74.8
(-3)
A 		286.1
(3)
P 		228
(1.4)
P 		257.2
(2.2)
P 		226.5
(1.3)
P 		118.2
(-1.8)
P 		211
avr 94.7
(-3) 		289.2
(3) 		207.2
(0.5) 		255.4
(2) 		234.4
(1.3) 		118.4
(-2.3) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 3.1
(-3)
A 		76.2
(2.7)
P 		80
(3)
P 		3
(-3)
A 		77
B 8.6
(-2.6)
A 		103.2
(3)
P 		68.3
(0.9)
P 		2.4
(-3)
A 		101
C 2.8
(-3)
A 		117.1
(3)
P 		110.7
(2.7)
P 		19.2
(-2.1)
A 		114
avr 4.8
(-3) 		98.8
(3) 		86.3
(2.2) 		8.2
(-2.8) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 27.3
(-3)
A 		104.3
(3)
P 		47.4
(-1.4)
P 		74.1
(0.6)
P 		75.8
(0.8)
P 		33.7
(-2.5)
P 		77
B 21.3
(-3)
A 		95.9
(3)
P 		42.7
(-1.3)
P 		57.5
(-0.1)
P 		91.6
(2.7)
P 		36.8
(-1.8)
P 		75
C 27.7
(-3)
A 		87.3
(3)
P 		58
(0.1)
P 		51.7
(-0.6)
P 		73.3
(1.6)
P 		39.6
(-1.8)
P 		60
avr 25.4
(-3) 		95.8
(3) 		49.4
(-1) 		61.1
(0) 		80.2
(1.7) 		36.7
(-2) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178728_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17549
Sequence Type Exemplar sequence
Representative Public ID R01E6.2 NCBI
Target Description R01E6.2 /REP_DB=WormBase Gene ID /WP=CE03519 /TR=Q21619 /GB=CAA92188.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077867(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077867 NCBI Caenorhabditis elegans R01E6.2 (R01E6.2) mRNA, complete cds. 9/11 None
R01E6.2 ENSEMBL cdna:known chromosome:CEL140:X:13565536:13566356:-1 gene:R01E6.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031394 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031400 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13565497-13566356(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01E6.2
Entrez Gene 187505 Entrez gene
SwissProt Q21619 EMBL-EBI
WormBase CE35593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92188 Hypothetical protein R01E6.2 [Caenorhabditis elegans] ref|NP_510268.2| R01E6.2 [Caenorhabditis elegans] 5.0E-91
blast CAE63123 Hypothetical protein CBG07421 [Caenorhabditis briggsae] 3.0E-83
blast AAU29501 aspartyl protease inhibitor 1 [Ancylostoma ceylanicum] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR010480 EMBL-EBI Pepsin inhibitor-3-likeed 14.0
Pfam IPR010480 EMBL-EBI Pepsin inhibitor-3-likeed 2.7E-30
Sequence
Target Sequence 
>C. ELEGANS:178728_AT
atgataagaatcctcgctagcctggcacttctttttccctttgtccttcctttcaactat
aacaatggtgcaagtgctgcatgtattgttacgaagaacctcctcttctcacatggaaac
ctcattcgtcaattgaaaaaagacgaagtagattccttcaaaaaatacaagaaggaactt
catgttttcaatacgaaaataaatgaagcttttgacaaggctgaggagaatgaagctaag
aattctacagtacctccaatgccaattcgaccaacccttccatctttctgcactggagcc
gacactacaatgtacattttcggagcttgtacagttcaaaacaacaaggtatacattggc
acagtacttgcacgcgagcttgaagagaaggaaaagggaaagcttgctgattttgcaaag
aaacttgccgcagttactgtaagctgtttaaaaactaagtggcgtaacttgaatcgaaaa
ttttcagccaggaactacaccaccaacggatatctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATAAGAATCCTCGCTAGCCTGG 74 47 13 Antisense
TTTGTCCTTCCTTTCAACTATAACA 125 667 52 Antisense
GCAAGTGCTGCATGTATTGTTACGA 440 321 82 Antisense
GTTACGAAGAACCTCCTCTTCTCAC 662 445 100 Antisense
TTCTCACATGGAAACCTCATTCGTC 318 691 118 Antisense
AGAATTCTACAGTACCTCCAATGCC 614 73 251 Antisense
TGCACTGGAGCCGACACTACAATGT 637 575 301 Antisense
CACAGTACTTGCACGCGAGCTTGAA 109 197 372 Antisense
GAAACTTGCCGCAGTTACTGTAAGC 342 335 432 Antisense
TTTTCAGCCAGGAACTACACCACCA 44 675 493 Antisense
AACTACACCACCAACGGATATCTAC 670 139 505 Antisense
Sequence Source Affymetrix Proprietary Database