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[178726_s_at]

Description R11A5.2 /REP_DB=WormBase Gene ID /WP=CE12724 /TR=O45717 /GB=CAB05597.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 83      6grp_total > 48      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 779
1 2 3 4 range
A 666.4
(0.5)
P 		280.9
(-2.5)
P 		216.5
(-3)
P 		981
(3)
P 		765
B 588.9
(0.2)
P 		202.2
(-3)
P 		265.5
(-2.5)
P 		923.3
(3)
P 		721
C 774.9
(3)
P 		252.8
(-3)
P 		365.8
(-1.7)
P 		729.4
(2.5)
P 		522
avr 676.7
(1.1) 		245.3
(-3) 		282.6
(-2.6) 		877.9
(3) 		633

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 569.1
(1.7)
P 		490.6
(0.5)
P 		261.2
(-3)
P 		293.1
(-2.5)
P 		380.3
(-1.2)
P 		652.5
(3)
P 		391
B 657.7
(3)
P 		436.3
(-0.8)
P 		310.5
(-3)
P 		344.4
(-2.4)
P 		464.8
(-0.3)
P 		595.7
(1.9)
P 		347
C 681
(3)
P 		366.5
(-1.5)
P 		260.7
(-3)
P 		382.9
(-1.3)
P 		458.3
(-0.2)
P 		616.4
(2.1)
P 		420
avr 635.9
(3) 		431.1
(-0.4) 		277.5
(-3) 		340.1
(-2) 		434.5
(-0.4) 		621.5
(2.8) 		358
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 242.6
(3)
P 		61
(-2.9)
P 		56.6
(-3)
P 		143.6
(-0.2)
P 		186
B 187.8
(2.6)
P 		49.9
(-3)
P 		61.5
(-2.5)
P 		196.7
(3)
P 		147
C 256.5
(3)
P 		72.7
(-3)
P 		127.5
(-1.2)
P 		123
(-1.4)
P 		184
avr 229
(3) 		61.2
(-3) 		81.9
(-2.3) 		154.4
(0.3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 104.9
(-0.6)
P 		174.5
(3)
P 		56.9
(-3)
P 		74.3
(-2.1)
P 		114.7
(-0.1)
P 		158.9
(2.2)
P 		118
B 228.9
(3)
P 		145.2
(-0.3)
P 		75.4
(-3)
P 		91.2
(-2.4)
P 		188.9
(1.4)
P 		222.1
(2.7)
P 		154
C 252.4
(3)
P 		111.8
(-1.5)
P 		66.3
(-3)
P 		77
(-2.7)
P 		148.3
(-0.4)
P 		206.3
(1.5)
P 		186
avr 195.4
(3) 		143.8
(0.6) 		66.2
(-3) 		80.8
(-2.3) 		150.6
(0.9) 		195.8
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178726_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1865
Sequence Type Exemplar sequence
Representative Public ID R11A5.2 NCBI
Target Description R11A5.2 /REP_DB=WormBase Gene ID /WP=CE12724 /TR=O45717 /GB=CAB05597.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059771 NCBI Caenorhabditis elegans R11A5.2 (R11A5.2) mRNA, complete cds. 11/11 None
SNAP00000037583 ENSEMBL cdna:SNAP chromosome:CEL140:I:7866248:7867529:-1 11/11 None
GENEFINDER00000037594 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7866248:7867529:-1 11/11 None
R11A5.2 ENSEMBL cdna:known chromosome:CEL140:I:7865948:7867543:-1 gene:R11A5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7866178-7867460(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11A5.2
Entrez Gene 172554 Entrez gene
SwissProt O45717 EMBL-EBI
WormBase CE12724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05597 Hypothetical protein R11A5.2 [Caenorhabditis elegans] ref|NP_492172.1| R11A5.2 [Caenorhabditis elegans] 1.0E-146
blast CAE56126 Hypothetical protein CBG23735 [Caenorhabditis briggsae] 1.0E-104
blast AAX27677 SJCHGC01565 protein [Schistosoma japonicum] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178726_S_AT
tatctagcatctgatctcggatcgaaactggatcatgctattgaaaagatagcaatgttg
gaaagtgagctttatgaacggcaagttgctgctgaagaaatgcatagattacgagaagaa
caacttcgaacaacagaacggccacgtttgattgtagaaccattgaggaatgatccagaa
attctgccggacgagccatccccaggtccaagtaaagaagagtttaaaatgagctcggaa
gatgttttcatggaagacgtgcagcaccacgaagatgttcgaatggaggaaactattgca
aaaattgacgaagtgcgcatcgatgacaataaaaatattcaagaaaaaagccaacgagta
tctaccggtacgggcgccggtgcttgcatcaatcgaatcgtcaaagacctgatgacaaaa
gtcgagcggctcgattcaattttatcgacgattcgcgtgagcaacaactcgtctaacaac
aat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTAGCATCTGATCTCGGATCGA 589 657 382 Antisense
ATCGAAACTGGATCATGCTATTGAA 464 35 402 Antisense
AGCTTTATGAACGGCAAGTTGCTGC 108 79 449 Antisense
ACTTCGAACAACAGAACGGCCACGT 325 95 504 Antisense
ACGGCCACGTTTGATTGTAGAACCA 85 89 519 Antisense
TCCAGAAATTCTGCCGGACGAGCCA 159 587 555 Antisense
GCCAACGAGTATCTACCGGTACGGG 315 277 731 Antisense
CGCCGGTGCTTGCATCAATCGAATC 550 255 756 Antisense
TCGAGCGGCTCGATTCAATTTTATC 254 603 803 Antisense
ATCGACGATTCGCGTGAGCAACAAC 580 35 825 Antisense
GAGCAACAACTCGTCTAACAACAAT 314 391 840 Antisense
Sequence Source Affymetrix Proprietary Database