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[178725_at]

Description D2005.4 /REP_DB=WormBase Gene ID /WP=CE17619 /TR=Q93410 /GB=CAB02083.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 78
(-2.4)
A 		67.2
(-3)
A 		100.8
(-1.1)
A 		171.3
(3)
P 		104
B 79.1
(-2.6)
A 		95.3
(-1.8)
A 		72
(-3)
A 		193.2
(3)
P 		121
C 52.9
(-3)
A 		85.2
(-1.9)
A 		83.7
(-1.9)
A 		228.8
(3)
P 		176
avr 70
(-3) 		82.6
(-2.4) 		85.5
(-2.3) 		197.8
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 79.9
(-2)
A 		7.7
(-3)
A 		85.2
(-1.9)
A 		116.5
(-1.5)
A 		253.3
(0.5)
P 		428.9
(3)
P 		421
B 62.5
(-3)
A 		106
(-2.4)
A 		68.1
(-2.9)
A 		111.4
(-2.3)
M 		286.9
(0.3)
P 		467.7
(3)
P 		405
C 77.1
(-2.7)
A 		125.6
(-1.8)
A 		58.2
(-3)
A 		160.5
(-1.2)
P 		224.3
(-0.1)
P 		407.5
(3)
P 		349
avr 73.2
(-3) 		79.8
(-2.8) 		70.5
(-3) 		129.5
(-2) 		254.8
(0) 		434.7
(3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.4
(3)
A 		14.6
(-3)
A 		26.4
(2.1)
A 		25.1
(1.6)
P 		14
B 25.2
(-0.9)
A 		23.5
(-1.3)
A 		16.7
(-3)
A 		41.2
(3)
P 		25
C 17.5
(-3)
A 		24.5
(-1)
A 		29.2
(0.3)
A 		38.6
(3)
P 		21
avr 23.7
(-1.8) 		20.9
(-3) 		24.1
(-1.6) 		35
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 14.7
(-2.3)
A 		2.7
(-3)
A 		18.6
(-2.1)
A 		29.5
(-1.4)
A 		76.4
(1.3)
P 		104.4
(3)
P 		102
B 21.7
(-2.8)
A 		35.3
(-2.3)
A 		16.5
(-3)
A 		29.5
(-2.5)
M 		116.6
(0.8)
P 		174.4
(3)
P 		158
C 28.6
(-2.3)
A 		38.3
(-1.8)
A 		14.8
(-3)
A 		32.3
(-2.1)
P 		72.6
(-0.1)
P 		136.4
(3)
P 		122
avr 21.7
(-2.7) 		25.4
(-2.6) 		16.6
(-3) 		30.4
(-2.3) 		88.5
(0.5) 		138.4
(3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.589
Sequence Type Exemplar sequence
Representative Public ID D2005.4 NCBI
Target Description D2005.4 /REP_DB=WormBase Gene ID /WP=CE17619 /TR=Q93410 /GB=CAB02083.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059759 NCBI Caenorhabditis elegans D2005.4 (D2005.4) mRNA, complete cds. 11/11 None
GENEFINDER00000018872 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7823331:7828363:1 11/11 None
SNAP00000018866 ENSEMBL cdna:SNAP chromosome:CEL140:I:7823394:7828363:1 9/11 None
D2005.4 ENSEMBL cdna:known chromosome:CEL140:I:7823115:7828474:1 gene:D2005.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7823324-7828294(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2005.4
Entrez Gene 172545 Entrez gene
SwissProt Q93410 EMBL-EBI
WormBase CE17619 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02083 Hypothetical protein D2005.4 [Caenorhabditis elegans] ref|NP_492160.1| D2005.4 [Caenorhabditis elegans] 0.0
blast CAE63743 Hypothetical protein CBG08273 [Caenorhabditis briggsae] 1.0E-157
blast CAE63743 Hypothetical protein CBG08273 [Caenorhabditis briggsae] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:178725_AT
cccactgaaacccttagcacaatgtggcaagaactgtttgtacggcttctacccggacga
taagtgggctcttttgaatgagccagtaatcaatgaaatttatcggctacgcgaaaaaca
cggctactcgaacaagatgggcaacaaaaaaaataaatcaagtgggtcccgaaagaatca
ttctcagcattattctcagccaacaatgaccgtagaggagtgcttgaaggagtacgagaa
cacaggaaatttcgccaagttctacccgaattacattttccaacggttgccaaaagagtt
cctccaaaaatacttagcctctaaaaaaaataaaaatatttctaaaaatccatcactaag
ttgttcaaactctacattggacaatatgaaagagacgtcgaaaagtatctatgtggacgt
ggatccagatgatcctctctccgatgaagcattcactgctcaacatcctgtggaagaatg
gtttcgacttcctctcgaatggcgcattgagatcgaaaggcagcgttttgtgaaaaaaga
acgcgccgaccgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCACTGAAACCCTTAGCACAATGT 107 249 2976 Antisense
GGCTACGCGAAAAACACGGCTACTC 447 537 3080 Antisense
ATTCTCAGCATTATTCTCAGCCAAC 186 11 3155 Antisense
CGCCAAGTTCTACCCGAATTACATT 253 257 3228 Antisense
GAATTACATTTTCCAACGGTTGCCA 167 325 3243 Antisense
GTTCCTCCAAAAATACTTAGCCTCT 546 441 3273 Antisense
TGGATCCAGATGATCCTCTCTCCGA 685 549 3395 Antisense
ATCCTCTCTCCGATGAAGCATTCAC 579 39 3407 Antisense
CATTCACTGCTCAACATCCTGTGGA 92 217 3425 Antisense
GAAGAATGGTTTCGACTTCCTCTCG 177 337 3448 Antisense
GAAAAAAGAACGCGCCGACCGTGCT 497 127 3507 Antisense
Sequence Source Affymetrix Proprietary Database