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[178722_at]

Description B0334.9 /REP_DB=WormBase Gene ID /WP=CE02941 /TR=Q17480 /GB=CAA91375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 38      6grp_total > 50      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 83.6
(-3)
P 		137.6
(3)
P 		97.7
(-1.4)
P 		97.1
(-1.5)
P 		54
B 58
(-3)
A 		83.9
(-0.8)
A 		108.4
(1.3)
P 		128.3
(3)
P 		70
C 36.9
(-3)
P 		124.9
(3)
P 		111.3
(2.1)
P 		85.6
(0.3)
P 		88
avr 59.5
(-3) 		115.5
(3) 		105.8
(2) 		103.7
(1.7) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 89.7
(-0.5)
P 		60.7
(-2.7)
P 		97.5
(0.1)
P 		135.8
(3)
M 		56.4
(-3)
P 		57
(-3)
P 		79
B 69.3
(3)
P 		69.2
(3)
A 		67.9
(2.9)
A 		46.6
(0.7)
A 		10.1
(-3)
A 		46.8
(0.7)
A 		59
C 69.3
(-1.2)
P 		104.5
(2.2)
P 		55.1
(-2.5)
P 		113.2
(3)
A 		63.5
(-1.7)
P 		49.9
(-3)
P 		63
avr 76.1
(0.6) 		78.1
(0.8) 		73.5
(0.3) 		98.5
(3) 		43.3
(-3) 		51.2
(-2.1) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 30.4
(3)
P 		29.9
(2.8)
P 		25.5
(1.2)
P 		14.2
(-3)
P 		16
B 18.5
(-3)
A 		20.7
(-1.5)
A 		25.1
(1.5)
P 		27.3
(3)
P 		9
C 12.2
(-3)
P 		35.9
(2.3)
P 		38.8
(3)
P 		14.4
(-2.5)
P 		27
avr 20.4
(-2) 		28.8
(2.5) 		29.8
(3) 		18.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 16.5
(-2.2)
P 		21.6
(-0.7)
P 		21.2
(-0.9)
P 		34.4
(3)
M 		17
(-2.1)
P 		13.9
(-3)
P 		21
B 24.1
(3)
P 		23.1
(2.7)
A 		16.5
(0.7)
A 		12.3
(-0.5)
A 		4.1
(-3)
A 		17.5
(1)
A 		20
C 25.7
(0.9)
P 		31.9
(3)
P 		14
(-3)
P 		22.8
(-0.1)
A 		20.6
(-0.8)
P 		16.7
(-2.1)
P 		18
avr 22.1
(1.2) 		25.5
(3) 		17.2
(-1.3) 		23.2
(1.8) 		13.9
(-3) 		16
(-1.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3551
Sequence Type Exemplar sequence
Representative Public ID B0334.9 NCBI
Target Description B0334.9 /REP_DB=WormBase Gene ID /WP=CE02941 /TR=Q17480 /GB=CAA91375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000019009 ENSEMBL cdna:SNAP chromosome:CEL140:II:11480709:11482288:1 11/11 None
GENEFINDER00000019026 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11480842:11482288:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
B0334.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11480705-11482285(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18705 hypothetical protein B0334.9 - Caenorhabditis elegans 1.0E-179
blast T18705 hypothetical protein B0334.9 - Caenorhabditis elegans 1.0E-157
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 2.0E-48
blast AAB04825 Hypothetical protein F54D11.3 [Caenorhabditis elegans] ref|NP_504249.2| F54D11.3 [Caenorhabditis elegans] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:178722_AT
cggagttgtctttcgaacactggcgacagataagctgtgcccttggtttagtatgatgag
ttcgcctataccttcaggaaaagttagcaaaaaggaaaaacaacatacaagaactcctct
ccgtttcaactgtcacaacgagctacgagtctgcggaggaaatgcagaaactcacgaacc
atttgagtttcaactcataacctatgcggcaacattgcctcgatgtactcgcctttgcag
aaaggtcgtatatgtgcagcgatgtggtcgtcaatatggacatggactcatcatgtacag
ctacacaaagcccggattaattccccggccactgaactctcgattaaaaccttcaactac
ggaatggtttgacagtttctcaccggaaatccgaggagacatatttcacttgctgaaaag
aagtccaatcagtgagactgtaagaaggattcataaagattacggggttcatctcagtcc
gaagcgactgttgaatctgagacctcaaagttggccgattaaagaccaaccacttgtcac
cgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAGTTGTCTTTCGAACACTGGCG 644 241 351 Antisense
GATAAGCTGTGCCCTTGGTTTAGTA 318 423 379 Antisense
ATGATGAGTTCGCCTATACCTTCAG 201 45 403 Antisense
ACAACATACAAGAACTCCTCTCCGT 158 113 450 Antisense
GTCACAACGAGCTACGAGTCTGCGG 108 465 482 Antisense
TCGATGTACTCGCCTTTGCAGAAAG 525 603 570 Antisense
GGCCACTGAACTCTCGATTAAAACC 674 541 677 Antisense
ATGGTTTGACAGTTTCTCACCGGAA 420 51 714 Antisense
TACGGGGTTCATCTCAGTCCGAAGC 74 649 811 Antisense
AAGCGACTGTTGAATCTGAGACCTC 505 149 832 Antisense
TAAAGACCAACCACTTGTCACCGAA 44 641 870 Antisense
Sequence Source Affymetrix Proprietary Database