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[178720_at]

Description F08G2.4 /REP_DB=WormBase Gene ID /WP=CE19776 /TR=Q9XVA4 /GB=CAB04058.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 57      4grp_high_8_8 > 12      6grp_highest_nonorm > 85      6grp_total > 48      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 602
1 2 3 4 range
A 742.5
(0.9)
P 		682
(-1.2)
P 		626.5
(-3)
M 		807.1
(3)
P 		181
B 775.4
(-0.4)
P 		648.2
(-1.7)
P 		514.9
(-3)
P 		1116.8
(3)
P 		602
C 803.3
(-0.7)
P 		647.7
(-3)
A 		648.8
(-3)
P 		1049.9
(3)
P 		402
avr 773.7
(-0.3) 		659.3
(-2) 		596.7
(-3) 		991.3
(3) 		395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 980.9
(3)
P 		785
(-0.3)
P 		621.1
(-3)
P 		808.5
(0.1)
P 		648.7
(-2.5)
P 		959.1
(2.6)
P 		360
B 958.1
(3)
P 		637
(-3)
P 		701.6
(-1.8)
P 		698.3
(-1.9)
P 		656.2
(-2.6)
P 		942.5
(2.7)
P 		321
C 974.4
(1.6)
P 		694.6
(-3)
P 		759.2
(-1.9)
P 		784.7
(-1.5)
P 		800.8
(-1.3)
P 		1063.4
(3)
P 		369
avr 971.1
(2.6) 		705.5
(-2.8) 		694
(-3) 		763.8
(-1.6) 		701.9
(-2.8) 		988.3
(3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 270.3
(3)
P 		148
(-1.8)
P 		163.8
(-1.2)
M 		118.2
(-3)
P 		152
B 247.3
(3)
P 		160.1
(-1.1)
P 		119.3
(-3)
P 		238
(2.6)
P 		128
C 265.9
(3)
P 		186.2
(-2.4)
A 		226.1
(0.3)
P 		177
(-3)
P 		89
avr 261.2
(3) 		164.8
(-3) 		169.7
(-2.7) 		177.7
(-2.2) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 180.8
(-1.1)
P 		279.2
(3)
P 		135.3
(-3)
P 		205
(-0.1)
P 		195.8
(-0.5)
P 		233.5
(1.1)
P 		144
B 333.4
(2.4)
P 		212
(-1.6)
P 		170.4
(-3)
P 		185
(-2.5)
P 		266.6
(0.2)
P 		351.4
(3)
P 		181
C 361.2
(3)
P 		212
(-1.4)
P 		193.2
(-2)
P 		157.8
(-3)
P 		259.1
(-0)
P 		356
(2.8)
P 		203
avr 291.8
(2.1) 		234.4
(-0.2) 		166.3
(-3) 		182.6
(-2.3) 		240.5
(0) 		313.6
(3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3581
Sequence Type Exemplar sequence
Representative Public ID F08G2.4 NCBI
Target Description F08G2.4 /REP_DB=WormBase Gene ID /WP=CE19776 /TR=Q9XVA4 /GB=CAB04058.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064499 NCBI Caenorhabditis elegans F08G2.4 (F08G2.4) mRNA, complete cds. 11/11 None
SNAP00000034715 ENSEMBL cdna:SNAP chromosome:CEL140:II:13830499:13834550:1 11/11 None
GENEFINDER00000034727 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13830499:13831014:1 11/11 None
F08G2.4 ENSEMBL cdna:known chromosome:CEL140:II:13830499:13831014:1 gene:F08G2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13830495-13831011(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G2.4
Entrez Gene 175035 Entrez gene
SwissProt Q9XVA4 EMBL-EBI
WormBase CE19776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04058 Hypothetical protein F08G2.4 [Caenorhabditis elegans] ref|NP_496900.1| F08G2.4 [Caenorhabditis elegans] gb|AAG50226.1| 2O123 [Caenorhabditis elegans] sp|Q9XVA4|YS0I_CAEEL Hypothetical protein F08G2.4 in chromosome II 1.0E-98
blast CAB04058 Hypothetical protein F08G2.4 [Caenorhabditis elegans] ref|NP_496900.1| F08G2.4 [Caenorhabditis elegans] gb|AAG50226.1| 2O123 [Caenorhabditis elegans] sp|Q9XVA4|YS0I_CAEEL Hypothetical protein F08G2.4 in chromosome II 4.0E-95
blast CAE73268 Hypothetical protein CBG20684 [Caenorhabditis briggsae] 2.0E-58
blast CAE73268 Hypothetical protein CBG20684 [Caenorhabditis briggsae] 3.0E-58
Sequence
Target Sequence 
>C. ELEGANS:178720_AT
tgccagacaaccacaaggatccgccagacttcaacaacctcgagatgaaactagaggaac
gaatcgaattgtcacgggaagatcaggatattcaaagtacgagcagctcctatccacact
gtgaagctctcgatcacatagtctcaatggaatccacgtacgattttcaccgtcaaatgg
ctcacaaggacctgcaaaagcaccgacaggaatatgagaaggctagcgagaagattctgg
agcttcggaaaaagctgaccgactggaatatggatccgaagaagagaaagtggatcgaag
acgacctggattcactggtcaggaaacaagaaagcgccctatcccgtatcagactagcgg
aaaagtgcacaaagagggatctgcggaatgatccaccaccagcatatcagccggatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAGACAACCACAAGGATCCGCC 648 585 14 Antisense
CCAGACTTCAACAACCTCGAGATGA 626 269 37 Antisense
AAAGTACGAGCAGCTCCTATCCACA 52 123 107 Antisense
GAAGCTCTCGATCACATAGTCTCAA 122 343 136 Antisense
ATCCACGTACGATTTTCACCGTCAA 703 37 165 Antisense
CAAATGGCTCACAAGGACCTGCAAA 62 193 187 Antisense
GGATCGAAGACGACCTGGATTCACT 312 513 305 Antisense
GGAAACAAGAAAGCGCCCTATCCCG 449 525 335 Antisense
GCCCTATCCCGTATCAGACTAGCGG 187 287 349 Antisense
GGATCTGCGGAATGATCCACCACCA 644 511 390 Antisense
ACCACCAGCATATCAGCCGGATGAT 421 85 408 Antisense
Sequence Source Affymetrix Proprietary Database