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[178719_at]

Description F13E9.5 /REP_DB=WormBase Gene ID /WP=CE05607 /TR=Q19410 /GB=CAA93408.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 29.9
(1.5)
A 		9.7
(-3)
A 		26.5
(0.7)
A 		36.9
(3)
A 		27
B 22.8
(-0.6)
A 		47.4
(3)
A 		6.4
(-3)
A 		23.6
(-0.5)
A 		41
C 39.6
(0.7)
A 		12.8
(-3)
A 		29.3
(-0.7)
A 		55.7
(3)
A 		43
avr 30.8
(0.4) 		23.3
(-2.1) 		20.7
(-3) 		38.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 65.2
(3)
A 		13.6
(-3)
A 		14.1
(-2.9)
A 		22.3
(-2)
A 		23.6
(-1.8)
A 		26.4
(-1.5)
A 		52
B 29.4
(-0.8)
A 		33.8
(2.5)
A 		31.8
(1)
A 		27.2
(-2.4)
A 		26.4
(-3)
A 		34.5
(3)
A 		8
C 19.8
(0.2)
A 		16.9
(-0.5)
A 		6.2
(-2.8)
A 		5.4
(-3)
A 		32.5
(3)
A 		19.8
(0.2)
A 		27
avr 38.1
(3) 		21.4
(-1.8) 		17.4
(-3) 		18.3
(-2.7) 		27.5
(-0.1) 		26.9
(-0.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.9
(3)
A 		2.1
(-3)
A 		6.9
(0.3)
A 		5.4
(-0.8)
A 		9
B 7.3
(0.4)
A 		11.7
(3)
A 		1.5
(-3)
A 		5
(-0.9)
A 		10
C 13.1
(3)
A 		3.7
(-3)
A 		10.2
(1.1)
A 		9.4
(0.6)
A 		9
avr 10.4
(3) 		5.8
(-3) 		6.2
(-2.5) 		6.6
(-2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12
(3)
A 		4.8
(-1.9)
A 		3.1
(-3)
A 		5.7
(-1.2)
A 		7.1
(-0.3)
A 		6.4
(-0.8)
A 		9
B 10.2
(0.2)
A 		11.2
(1.2)
A 		7.7
(-2.5)
A 		7.2
(-3)
A 		10.7
(0.7)
A 		12.9
(3)
A 		6
C 7.3
(1)
A 		5.2
(-0.4)
A 		1.6
(-2.7)
A 		1.1
(-3)
A 		10.5
(3)
A 		6.6
(0.5)
A 		9
avr 9.8
(3) 		7.1
(0.2) 		4.1
(-3) 		4.7
(-2.4) 		9.4
(2.6) 		8.6
(1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9197
Sequence Type Exemplar sequence
Representative Public ID F13E9.5 NCBI
Target Description F13E9.5 /REP_DB=WormBase Gene ID /WP=CE05607 /TR=Q19410 /GB=CAA93408.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069619(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069619 NCBI Caenorhabditis elegans F13E9.5 (F13E9.5) mRNA, complete cds. 9/11 None
SNAP00000017043 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10882943:10884251:-1 9/11 None
GENEFINDER00000017060 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10882943:10884251:-1 9/11 None
F13E9.5 ENSEMBL cdna:known chromosome:CEL140:IV:10882943:10884334:-1 gene:F13E9.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10882948-10884371(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E9.5
Entrez Gene 184423 Entrez gene
SwissProt Q19410 EMBL-EBI
WormBase CE35472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93408 Hypothetical protein F13E9.5 [Caenorhabditis elegans] ref|NP_502020.2| F13E9.5 [Caenorhabditis elegans] 1.0E-173
blast CAE74383 Hypothetical protein CBG22113 [Caenorhabditis briggsae] 3.0E-89
Sequence
Target Sequence 
>C. ELEGANS:178719_AT
gagcgaagcattgaagttcttaccaaaagaagaagtcgaagcgaaaaatcgatacgcact
gaatgccatcgtcgacaacaaacctttctggcttgtcggagatccgtacgttttcattgt
tgaatctttgaacttgaagacaatttcagagtggttccagaagatgaagaggaagcatat
gttgatgcagaaatgttgtcaaactatctataatatattttttcagtacacctcaaatcc
cgaaggttcccaatatatctacaatgagaccgaacgcaaagaattcttcccttgggggcc
aactcctcaactctggaacgagacaaagcattttcagaataagttagaaattgttggaat
aaacgagaatacacatttaaagaattttttcagaatgctcgttattggaaacacgttgag
atcgattattgaatcgacggctgagagaaaaggaattccaaaagagcgagttgataaagg
acataagccaattctcaaatggtctcagaaaacaaaaatagttgattacgccatggaatc
ggtgccattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGAAGCATTGAAGTTCTTACCA 522 385 492 Antisense
GATACGCACTGAATGCCATCGTCGA 264 425 542 Antisense
CCATCGTCGACAACAAACCTTTCTG 564 271 557 Antisense
CAACAAACCTTTCTGGCTTGTCGGA 91 189 567 Antisense
GTCGGAGATCCGTACGTTTTCATTG 289 473 586 Antisense
TTTTCAGTACACCTCAAATCCCGAA 225 675 711 Antisense
AATCCCGAAGGTTCCCAATATATCT 572 145 727 Antisense
GAACGCAAAGAATTCTTCCCTTGGG 193 347 763 Antisense
CCAACTCCTCAACTCTGGAACGAGA 225 277 790 Antisense
TAAGCCAATTCTCAAATGGTCTCAG 106 639 975 Antisense
TACGCCATGGAATCGGTGCCATTGG 655 647 1018 Antisense
Sequence Source Affymetrix Proprietary Database