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[178718_at]

Description T22A3.4 /REP_DB=WormBase Gene ID /WP=CE13918 /TR=P91821 /GB=CAB03382.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 31      6grp_total > 12      4grp_total > 41      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 664.7
(-3)
P 		1004.5
(1)
P 		1171.3
(3)
P 		937.1
(0.2)
P 		507
B 701.4
(-3)
P 		1206.9
(3)
P 		1197.2
(2.9)
P 		870.4
(-1)
P 		506
C 657.9
(-3)
P 		1156.6
(1.8)
P 		1281.7
(3)
P 		834.4
(-1.3)
P 		624
avr 674.7
(-3) 		1122.7
(2) 		1216.7
(3) 		880.6
(-0.7) 		542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 638
1 2 3 4 5 6 range
A 1055.1
(1.6)
P 		1182.8
(3)
P 		763.8
(-1.5)
P 		762.3
(-1.5)
P 		687.6
(-2.3)
P 		621.6
(-3)
P 		561
B 936.5
(1.4)
P 		1083.7
(3)
P 		912.3
(1.1)
P 		803.7
(-0.1)
P 		694.9
(-1.3)
P 		545.3
(-3)
P 		538
C 1015
(2)
P 		1102.5
(3)
P 		910
(0.8)
P 		803.1
(-0.4)
P 		659.9
(-2)
P 		576.5
(-3)
P 		526
avr 1002.2
(1.7) 		1123
(3) 		862
(0.1) 		789.7
(-0.7) 		680.8
(-1.9) 		581.1
(-3) 		542
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 242
(0.7)
P 		218.1
(-0.1)
P 		306.2
(3)
P 		137.2
(-3)
P 		169
B 223.7
(-1)
P 		298.1
(3)
P 		277.4
(1.9)
P 		185.5
(-3)
P 		113
C 217.8
(-1.5)
P 		332.5
(0.8)
P 		446.7
(3)
P 		140.7
(-3)
P 		306
avr 227.8
(-0.7) 		282.9
(1.1) 		343.4
(3) 		154.5
(-3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 194.5
(-2)
P 		420.7
(3)
P 		166.3
(-2.7)
P 		193.3
(-2.1)
P 		207.5
(-1.7)
P 		151.3
(-3)
P 		269
B 325.8
(1.7)
P 		360.7
(3)
P 		221.5
(-2.3)
P 		212.9
(-2.6)
P 		282.3
(0)
P 		203.4
(-3)
P 		157
C 376.2
(3)
P 		336.4
(1.9)
P 		231.6
(-1)
P 		161.5
(-3)
P 		213.5
(-1.5)
P 		193
(-2.1)
P 		215
avr 298.8
(0.7) 		372.6
(3) 		206.5
(-2.2) 		189.2
(-2.8) 		234.4
(-1.4) 		182.6
(-3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1887
Sequence Type Exemplar sequence
Representative Public ID T22A3.4 NCBI
Target Description T22A3.4 /REP_DB=WormBase Gene ID /WP=CE13918 /TR=P91821 /GB=CAB03382.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182049(11), NM_060371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182049 NCBI Caenorhabditis elegans T22A3.4b (T22A3.4) mRNA, complete cds. 11/11 None
NM_060371 NCBI Caenorhabditis elegans T22A3.4a (T22A3.4) mRNA, complete cds. 11/11 None
SNAP00000000336 ENSEMBL cdna:SNAP chromosome:CEL140:I:10598934:10601961:1 11/11 None
GENEFINDER00000000345 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10598934:10602769:1 11/11 None
T22A3.4b ENSEMBL cdna:known chromosome:CEL140:I:10598841:10602069:1 gene:T22A3.4 11/11 None
T22A3.4a ENSEMBL cdna:known chromosome:CEL140:I:10598934:10602083:1 gene:T22A3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10598864-10601892(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22A3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56600 Hypothetical protein T22A3.4b [Caenorhabditis elegans] ref|NP_871849.1| T22A3.4b [Caenorhabditis elegans] 0.0
blast CAB03382 Hypothetical protein T22A3.4a [Caenorhabditis elegans] ref|NP_492772.1| T22A3.4a [Caenorhabditis elegans] 0.0
blast CAE56909 Hypothetical protein CBG24752 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 6.2E-25
Sequence
Target Sequence 
>C. ELEGANS:178718_AT
atacatgaaaacccttccagcatcatttgatccaaagtgtccagcagaaattctcaaaga
actccttgcaaaagccgaacaaatactgcatccatcaaatgtctacgtggcaagactcag
aaccgcattattccacgtcacaggaactcttacgatggataatctatcctcaatgcatac
acaaatctacaacaactataaaatgtgtttcccgaaagcagatcgacacgttggattcca
acttcttcatattgtaaaagcattaattgaaaaagacgagagagatgaagccatgccata
cgcatttgatgctatgaatattttcgaagtttgctttggattagaccatccatattacct
tcaaactcttgcattgtggacttatttagagaaaaagattccaaaatcaaccgaagaact
cgttcaactcacaaatttctccgataatcgtccaattgatattgtgagcctcctgaaaag
agccaacatgcttccaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACATGAAAACCCTTCCAGCATCA 108 25 984 Antisense
AAGCCGAACAAATACTGCATCCATC 135 149 1055 Antisense
GTGGCAAGACTCAGAACCGCATTAT 431 491 1090 Antisense
TCCACGTCACAGGAACTCTTACGAT 232 589 1115 Antisense
GATAATCTATCCTCAATGCATACAC 91 423 1141 Antisense
GCAGATCGACACGTTGGATTCCAAC 301 313 1201 Antisense
GGATTCCAACTTCTTCATATTGTAA 172 509 1216 Antisense
AGAGATGAAGCCATGCCATACGCAT 400 69 1264 Antisense
GACCATCCATATTACCTTCAAACTC 596 383 1327 Antisense
CTCGTTCAACTCACAAATTTCTCCG 530 231 1402 Antisense
GAAAAGAGCCAACATGCTTCCACCG 561 353 1458 Antisense
Sequence Source Affymetrix Proprietary Database