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[178716_at]

Description D2085.2 /REP_DB=WormBase Gene ID /WP=CE03106 /TR=Q18991 /GB=CAA91060.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 33.2
(-3)
A 		59.9
(0.1)
P 		38.8
(-2.4)
A 		85.5
(3)
A 		52
B 6.4
(-3)
A 		61.6
(1.5)
A 		80.7
(3)
A 		79.5
(2.9)
P 		74
C 12.9
(-3)
A 		54.3
(-0.9)
A 		38.8
(-1.7)
P 		133.7
(3)
P 		121
avr 17.5
(-3) 		58.6
(0) 		52.8
(-0.4) 		99.6
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 63.8
(-0.4)
A 		38.8
(-3)
A 		95.9
(3)
P 		86.6
(2)
P 		45
(-2.3)
A 		67.7
(0)
A 		57
B 46.8
(-2.9)
P 		45.6
(-3)
A 		96.4
(1.4)
P 		64
(-1.4)
M 		98.7
(1.6)
P 		114.3
(3)
P 		69
C 39.5
(-3)
A 		55
(-2)
A 		64.3
(-1.4)
A 		113.6
(1.7)
P 		74
(-0.8)
A 		134.2
(3)
P 		95
avr 50
(-2.6) 		46.5
(-3) 		85.5
(1) 		88.1
(1.2) 		72.6
(-0.3) 		105.4
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.1
(1.1)
A 		13
(3)
P 		10.1
(-3)
A 		12.5
(2)
A 		3
B 2
(-3)
A 		15.2
(1.7)
A 		18.7
(3)
A 		16.9
(2.4)
P 		17
C 4.3
(-3)
A 		15.6
(0.7)
A 		13.5
(0)
P 		22.5
(3)
P 		18
avr 6.1
(-3) 		14.6
(1.6) 		14.1
(1.3) 		17.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11.8
(-3)
A 		13.8
(-1.8)
A 		20.9
(2.4)
P 		22
(3)
P 		13.6
(-1.9)
A 		16.5
(-0.2)
A 		10
B 16.3
(-2.8)
P 		15.2
(-3)
A 		23.4
(-1.2)
P 		17
(-2.6)
M 		40.1
(2.5)
P 		42.6
(3)
P 		27
C 14.6
(-3)
A 		16.8
(-2.6)
A 		16.4
(-2.6)
A 		22.9
(-1.4)
P 		23.9
(-1.2)
A 		44.9
(3)
P 		30
avr 14.2
(-3) 		15.3
(-2.7) 		20.2
(-1.2) 		20.6
(-1.1) 		25.9
(0.4) 		34.7
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3871
Sequence Type Exemplar sequence
Representative Public ID D2085.2 NCBI
Target Description D2085.2 /REP_DB=WormBase Gene ID /WP=CE03106 /TR=Q18991 /GB=CAA91060.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063438 NCBI Caenorhabditis elegans D2085.2 (D2085.2) mRNA, complete cds. 11/11 None
SNAP00000003892 ENSEMBL cdna:SNAP chromosome:CEL140:II:8659069:8664371:1 9/11 None
GENEFINDER00000003901 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8659069:8659682:1 11/11 None
D2085.2 ENSEMBL cdna:known chromosome:CEL140:II:8659069:8659682:1 gene:D2085.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8659065-8659679(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2085.2
Entrez Gene 183959 Entrez gene
SwissProt Q18991 EMBL-EBI
WormBase CE34785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91063 Hypothetical protein D2085.3 [Caenorhabditis elegans] ref|NP_495841.1| D2085.3 [Caenorhabditis elegans] 0.0
blast CAE57535 Hypothetical protein CBG00512 [Caenorhabditis briggsae] 0.0
blast CAA91060 Hypothetical protein D2085.2 [Caenorhabditis elegans] ref|NP_495839.2| D2085.2 [Caenorhabditis elegans] 1.0E-79
blast CAA91060 Hypothetical protein D2085.2 [Caenorhabditis elegans] ref|NP_495839.2| D2085.2 [Caenorhabditis elegans] 1.0E-67
blast CAE57537 Hypothetical protein CBG00514 [Caenorhabditis briggsae] 1.0E-54
blast AAN13156 unknown protein [Arabidopsis thaliana] gb|AAL38720.1| unknown protein [Arabidopsis thaliana] ref|NP_850532.1| autophagocytosis-associated family protein [Arabidopsis thaliana] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 6.2
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.17
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.0060
Pfam IPR003307 EMBL-EBI eIF4-gamma/eIF5/eIF2-epsilon 2.0E-28
Pfam IPR007135 EMBL-EBI Autophagocytosis associated protein, C-terminal 5.6E-48
Pfam IPR007135 EMBL-EBI Autophagocytosis associated protein, C-terminal 1.3E-59
Sequence
Target Sequence 
>C. ELEGANS:178716_AT
gagagacccatttgaagacactttcagatggacgagttatcacttctgagacacacatcc
tgtacaattccacatatcaagttccaacaatttggttcaatttctttgagaataatggaa
gccctcttccattccgtactgtcattcgagatgtactgaacatttctgaaacagaagagt
ctgaagcttcaattcgatcgagaatttcacattatgagcatccgtttatgggagttttgt
attacaatattcatccatgtaatacttcaaatattatgaaagaactcaatacggatcgat
catatcttatgtcgtggttcagcgtatatgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGACCCATTTGAAGACACTTTC 332 395 164 Antisense
GGACGAGTTATCACTTCTGAGACAC 431 523 193 Antisense
GAGACACACATCCTGTACAATTCCA 418 393 211 Antisense
ACAATTCCACATATCAAGTTCCAAC 217 115 227 Antisense
TAATGGAAGCCCTCTTCCATTCCGT 536 635 276 Antisense
CTTCCATTCCGTACTGTCATTCGAG 615 219 289 Antisense
GTCTGAAGCTTCAATTCGATCGAGA 414 471 342 Antisense
GAATTTCACATTATGAGCATCCGTT 657 325 365 Antisense
GAAAGAACTCAATACGGATCGATCA 285 357 441 Antisense
GGATCGATCATATCTTATGTCGTGG 396 511 456 Antisense
ATGTCGTGGTTCAGCGTATATGGGC 540 47 472 Antisense
Sequence Source Affymetrix Proprietary Database