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[178715_at]

Description C33G3.3 /REP_DB=WormBase Gene ID /WP=CE08559 /TR=Q93323 /GB=CAB01736.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 55      6grp_total > 83      4grp_total > 49      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2831
1 2 3 4 range
A 46.4
(-3)
A 		2039.3
(1.3)
P 		2845.6
(3)
P 		160.2
(-2.8)
M 		2799
B 14.7
(-3)
A 		2358.6
(2.1)
P 		2785.6
(3)
P 		85.3
(-2.8)
A 		2771
C 59.7
(-3)
A 		2190.2
(1.8)
P 		2738
(3)
P 		115.3
(-2.9)
A 		2678
avr 40.3
(-3) 		2196
(1.7) 		2789.7
(3) 		120.3
(-2.8) 		2749

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2953
1 2 3 4 5 6 range
A 204.7
(-3)
P 		1483.9
(-0.4)
P 		1169.9
(-1)
P 		2191.6
(1)
P 		3157.8
(3)
P 		1428.1
(-0.5)
P 		2953
B 269.9
(-3)
P 		1487.2
(-0.2)
P 		1237.6
(-0.8)
P 		2469.8
(2.1)
P 		2856.9
(3)
P 		1285.4
(-0.6)
P 		2587
C 229.3
(-3)
P 		1506.9
(-0.3)
P 		1336.6
(-0.6)
P 		2290.5
(1.4)
P 		3030.9
(3)
P 		1409.4
(-0.5)
P 		2802
avr 234.6
(-3) 		1492.7
(-0.3) 		1248
(-0.8) 		2317.3
(1.5) 		3015.2
(3) 		1374.3
(-0.5) 		2781
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 950
1 2 3 4 range
A 16.9
(-3)
A 		442.7
(0.5)
P 		743.9
(3)
P 		23.5
(-2.9)
M 		727
B 4.7
(-3)
A 		582.5
(2.4)
P 		645.5
(3)
P 		18.2
(-2.9)
A 		641
C 19.8
(-3)
A 		629.7
(0.9)
P 		954.3
(3)
P 		19.4
(-3)
A 		935
avr 13.8
(-3) 		551.6
(1.2) 		781.2
(3) 		20.4
(-2.9) 		767

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1123
1 2 3 4 5 6 range
A 37.7
(-3)
P 		527.7
(0.2)
P 		254.8
(-1.6)
P 		555.9
(0.4)
P 		952.9
(3)
P 		347.7
(-1)
P 		915
B 93.9
(-3)
P 		495
(-0.7)
P 		300.5
(-1.8)
P 		654.2
(0.2)
P 		1160.7
(3)
P 		479.3
(-0.8)
P 		1067
C 85
(-3)
P 		459.8
(-0.5)
P 		340.2
(-1.3)
P 		460.6
(-0.5)
P 		980.7
(3)
P 		471.8
(-0.4)
P 		896
avr 72.2
(-3) 		494.2
(-0.4) 		298.5
(-1.6) 		556.9
(0) 		1031.4
(3) 		432.9
(-0.7) 		959
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17541
Sequence Type Exemplar sequence
Representative Public ID C33G3.3 NCBI
Target Description C33G3.3 /REP_DB=WormBase Gene ID /WP=CE08559 /TR=Q93323 /GB=CAB01736.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077940 NCBI Caenorhabditis elegans C33G3.3 (C33G3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000041084 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14062282:14067904:-1 11/11 None
SNAP00000041080 ENSEMBL cdna:SNAP chromosome:CEL140:X:14064354:14067904:-1 11/11 None
C33G3.3 ENSEMBL cdna:known chromosome:CEL140:X:14064354:14067597:-1 gene:C33G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14064353-14067597(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33G3.3
Entrez Gene 181516 Entrez gene
SwissProt Q93323 EMBL-EBI
WormBase CE08559 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01736 Hypothetical protein C33G3.3 [Caenorhabditis elegans] ref|NP_510341.1| C33G3.3 [Caenorhabditis elegans] 0.0
blast CAE63043 Hypothetical protein CBG07310 [Caenorhabditis briggsae] 0.0
blast CAE67844 Hypothetical protein CBG13431 [Caenorhabditis briggsae] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 1.3E-4
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 1.3E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510341.1 5 246-263,270-292,307-329,341-360,385-407
C33G3.3 5 246-263,270-292,307-329,341-360,385-407
GENEFINDER00000041084 4 299-316,323-345,360-382,435-457
SNAP00000041080 5 299-316,323-345,360-382,394-413,438-460
Sequence
Target Sequence 
>C. ELEGANS:178715_AT
ggaactgttccagagtcctttgacgatccatctgagattgctcaactcggcttctgcttg
aaccttaagagagcccatagctcattgaagattgaacttgccattccacttttcatcacc
actgcgcttttccttctcccaccacttttcggaagcgtaaagatccagatttacttgaaa
atgtttgtgatggggctacaatttatgactcttcttatcttctcaacaagaattgctcca
ttcctttccagcactgcaagcactcctaaaccaatgagattcctcgaaattgctttggtt
ttcaatctaatctccatcacaacttcaattattattttctgttgtatgcaagtgaagcgt
actcttccaccatggggaagagttacacagttcgccaacttcatcaatggattccttgga
gttttgaatatatccggagttgaagagtacaatcttgacaaatatgatgagcaagtctcc
caaaactcatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTGTTCCAGAGTCCTTTGACG 685 527 652 Antisense
AGTCCTTTGACGATCCATCTGAGAT 313 61 665 Antisense
TCGGCTTCTGCTTGAACCTTAAGAG 677 605 698 Antisense
AGATTGAACTTGCCATTCCACTTTT 529 65 740 Antisense
TTATGACTCTTCTTATCTTCTCAAC 429 681 854 Antisense
ACAAGAATTGCTCCATTCCTTTCCA 138 113 877 Antisense
ACTGCAAGCACTCCTAAACCAATGA 553 97 904 Antisense
GTTTTCAATCTAATCTCCATCACAA 262 449 949 Antisense
GCAAGTGAAGCGTACTCTTCCACCA 679 321 999 Antisense
GTTACACAGTTCGCCAACTTCATCA 92 447 1033 Antisense
GAGCAAGTCTCCCAAAACTCATATC 170 391 1120 Antisense
Sequence Source Affymetrix Proprietary Database