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[178714_at]

Description K04H8.2 /REP_DB=WormBase Gene ID /WP=CE11758 /TR=O01337 /GB=CAB04564.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 15.3
(3)
A 		1.3
(-3)
A 		8.4
(0)
A 		4.5
(-1.6)
A 		14
B 2.7
(-2.8)
A 		1.6
(-3)
A 		10.4
(-1.6)
A 		39.7
(3)
A 		38
C 2.1
(-2.8)
A 		1.4
(-3)
A 		19.1
(3)
A 		12.7
(0.8)
A 		18
avr 6.7
(-1.2) 		1.4
(-3) 		12.6
(0.8) 		19
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 7.3
(-1.5)
A 		0.6
(-3)
A 		4.6
(-2.1)
A 		9.8
(-0.9)
A 		27.1
(3)
A 		4
(-2.2)
A 		27
B 5.3
(-1.2)
A 		3.5
(-2.3)
A 		2.3
(-3)
A 		7.5
(0.1)
A 		2.5
(-2.9)
A 		12.3
(3)
A 		10
C 7.2
(-1.8)
A 		3.8
(-2.4)
A 		31.7
(3)
A 		3.8
(-2.4)
A 		3
(-2.6)
A 		0.9
(-3)
A 		31
avr 6.6
(-0.7) 		2.6
(-3) 		12.9
(3) 		7
(-0.4) 		10.9
(1.8) 		5.7
(-1.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.6
(3)
A 		0.3
(-3)
A 		2.2
(-0.8)
A 		0.7
(-2.5)
A 		5
B 0.8
(-2.7)
A 		0.4
(-3)
A 		2.4
(-1.5)
A 		8.5
(3)
A 		8
C 0.7
(-2.7)
A 		0.4
(-3)
A 		6.6
(3)
A 		2.1
(-1.4)
A 		6
avr 2.4
(0.5) 		0.4
(-3) 		3.7
(2.8) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.3
(-2.2)
A 		0.2
(-3)
A 		1
(-2.4)
A 		2.5
(-1.3)
A 		8.2
(3)
A 		1
(-2.4)
A 		8
B 1.8
(-1.2)
A 		1.2
(-2.1)
A 		0.6
(-3)
A 		2
(-0.9)
A 		1
(-2.4)
A 		4.6
(3)
A 		4
C 2.7
(-1.2)
A 		1.2
(-2.3)
A 		8.1
(3)
A 		0.8
(-2.6)
A 		1
(-2.5)
A 		0.3
(-3)
A 		8
avr 1.9
(-0.6) 		0.9
(-3) 		3.2
(2.5) 		1.8
(-0.8) 		3.4
(3) 		2
(-0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1100
Sequence Type Exemplar sequence
Representative Public ID K04H8.2 NCBI
Target Description K04H8.2 /REP_DB=WormBase Gene ID /WP=CE11758 /TR=O01337 /GB=CAB04564.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061089 NCBI Caenorhabditis elegans K04H8.2 (K04H8.2) mRNA, complete cds. 11/11 None
K04H8.2 ENSEMBL cdna:known chromosome:CEL140:I:14261075:14261713:1 gene:K04H8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032444 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14261005-14261644(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04H8.2
Entrez Gene 187015 Entrez gene
SwissProt O01337 EMBL-EBI
WormBase CE11758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04564 Hypothetical protein K04H8.2 [Caenorhabditis elegans] ref|NP_493490.1| K04H8.2 [Caenorhabditis elegans] 1.0E-105
blast CAB05704 Hypothetical protein C49A1.6 [Caenorhabditis elegans] ref|NP_493487.1| C49A1.6 [Caenorhabditis elegans] 6.0E-44
blast CAB04563 Hypothetical protein K04H8.1 [Caenorhabditis elegans] ref|NP_493489.1| K04H8.1 [Caenorhabditis elegans] 1.0E-22
Sequence
Target Sequence 
>C. ELEGANS:178714_AT
aaacttcatgctatactttttttgtcttttttccaaacttttgaagacattatgaaaatt
catatcctttttcttagtttcccactgatatttgattttacaagcccgagcacccatatt
atggtattactccacggtgagctaacaaacttcctaaacttcaccgagaaaactgtgaat
tggtctagttgcgtaacaaactgccacaataaactggactgtattgtggcagggtttgaa
aatggaacttgtaaactttttgagatcggtaaactttccacgattaaaagattgaattcc
cactacgggaagatggtggcagttaagacagtcaccaacttgaccagttgtgactattcc
accaatggcaacgtgttgcaaggatttataaaccatgatcagccatacaatgtaacgata
tctcagaacacttggatcatccagaaacctcccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTCATGCTATACTTTTTTTGT 440 127 34 Antisense
TCATATCCTTTTTCTTAGTTTCCCA 259 619 93 Antisense
GTTTCCCACTGATATTTGATTTTAC 667 449 110 Antisense
AAGCCCGAGCACCCATATTATGGTA 659 149 135 Antisense
GGTATTACTCCACGGTGAGCTAACA 689 505 156 Antisense
GAGCTAACAAACTTCCTAAACTTCA 134 385 172 Antisense
GTCTAGTTGCGTAACAAACTGCCAC 528 467 216 Antisense
TGACCAGTTGTGACTATTCCACCAA 83 571 374 Antisense
ATTCCACCAATGGCAACGTGTTGCA 454 7 389 Antisense
GATATCTCAGAACACTTGGATCATC 106 427 450 Antisense
TTGGATCATCCAGAAACCTCCCAAG 546 705 465 Antisense
Sequence Source Affymetrix Proprietary Database