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[178712_at]

Description F38H4.6 /REP_DB=WormBase Gene ID /WP=CE10068 /TR=Q20185 /GB=CAB01177.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-3)
A 		4.2
(3)
A 		0.7
(-2.7)
A 		2.6
(0.4)
A 		4
B 3.2
(3)
A 		0.7
(-3)
A 		2.7
(1.8)
A 		3
(2.5)
A 		3
C 2.9
(-0.6)
A 		2.5
(-1.4)
A 		1.7
(-3)
A 		4.7
(3)
A 		3
avr 2.2
(-1.2) 		2.5
(-0.2) 		1.7
(-3) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.5
(-2.3)
A 		3.2
(-2.8)
A 		18.8
(0.8)
A 		2.5
(-3)
A 		28.2
(3)
A 		11.2
(-1)
A 		26
B 0.8
(-3)
A 		1.6
(-2.7)
A 		1.7
(-2.7)
A 		0.8
(-3)
A 		13.8
(1.2)
A 		19.5
(3)
A 		19
C 10.2
(-0.9)
A 		3.9
(-2.4)
A 		2.7
(-2.6)
A 		1
(-3)
A 		27.8
(3)
A 		25.8
(2.6)
A 		27
avr 5.5
(-1.9) 		2.9
(-2.6) 		7.7
(-1.3) 		1.4
(-3) 		23.3
(3) 		18.8
(1.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.2
(-3)
A 		0.9
(3)
A 		0.2
(-3)
A 		0.4
(-1.3)
A 		1
B 1
(3)
A 		0.2
(-3)
A 		0.6
(-0)
A 		0.6
(-0)
A 		1
C 1
(3)
A 		0.7
(-1.5)
A 		0.6
(-3)
A 		0.8
(0)
A 		0
avr 0.7
(3) 		0.6
(0) 		0.5
(-3) 		0.6
(0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1
(-2.7)
A 		1.1
(-2.6)
A 		4.1
(-0.3)
A 		0.6
(-3)
A 		8.5
(3)
A 		2.7
(-1.4)
A 		8
B 0.3
(-2.9)
A 		0.5
(-2.7)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		5.6
(1.6)
A 		7.3
(3)
A 		7
C 3.8
(-0.5)
A 		1.2
(-2.3)
A 		0.7
(-2.7)
A 		0.2
(-3)
A 		9
(3)
A 		8.6
(2.7)
A 		9
avr 1.7
(-1.9) 		0.9
(-2.5) 		1.7
(-1.9) 		0.3
(-3) 		7.7
(3) 		6.2
(1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10244
Sequence Type Exemplar sequence
Representative Public ID F38H4.6 NCBI
Target Description F38H4.6 /REP_DB=WormBase Gene ID /WP=CE10068 /TR=Q20185 /GB=CAB01177.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069841 NCBI Caenorhabditis elegans F38H4.6 (F38H4.6) mRNA, complete cds. 11/11 None
SNAP00000007678 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11847005:11847727:-1 9/11 None
GENEFINDER00000007688 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11847005:11847727:-1 9/11 None
F38H4.6 ENSEMBL cdna:known chromosome:CEL140:IV:11847005:11848115:-1 gene:F38H4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8340644-8341654(+) 90.74 90.74
chrIII:8348839-8349849(+) 90.74 90.74
chrIV:11847010-11848121(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38H4.6
Entrez Gene 185481 Entrez gene
SwissProt Q20185 EMBL-EBI
WormBase CE10068 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01177 Hypothetical protein F38H4.6 [Caenorhabditis elegans] ref|NP_502242.1| F38H4.6 [Caenorhabditis elegans] 1.0E-110
blast CAB01177 Hypothetical protein F38H4.6 [Caenorhabditis elegans] ref|NP_502242.1| F38H4.6 [Caenorhabditis elegans] 2.0E-86
blast P34538 Hypothetical protein R05D3.5 in chromosome III 3.0E-76
blast P34538 Hypothetical protein R05D3.5 in chromosome III 6.0E-76
blast CAE71281 Hypothetical protein CBG18166 [Caenorhabditis briggsae] 5.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 8.7E-26
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 8.7E-26
Sequence
Target Sequence 
>C. ELEGANS:178712_AT
atgtctcttggaactaatccattttacaaaataaaacgtgaaggagaaatatcactcaaa
ctcaaaaatcaattatttcgactttattttctgctcatttatagcagcttggagaactta
caaatggctgataaaaaatcaccggttgctgttggtatgacggttacaccatcaaatcaa
gcaaatttcgttgatgctggatcaactacattgatgaataaacccggtgaaccgacattc
aaattgggtattaatctgaataaagttgaattcaagtgcacagaagatcgaaaaccaata
tcagtaaacttgaagttgcacaatccaatggcagtcactgtttcgtacaaagttcgttgc
acgtctgctgatattttccgtgtccaacctccactgggatttgtgaaaccgaatgagaca
gtttcaattgtgatttggtatcagaatcaagataagaaagatgcaatttcaaagaatcac
tatttcgctttttaccataccaccagcgacggacgaactgctcgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCTTGGAACTAATCCATTTT 17 49 13 Antisense
AGAAATATCACTCAAACTCAAAAAT 560 71 57 Antisense
GTTGGTATGACGGTTACACCATCAA 232 435 163 Antisense
GACGGTTACACCATCAAATCAAGCA 405 377 171 Antisense
AAATCAAGCAAATTTCGTTGATGCT 193 117 186 Antisense
GGTGAACCGACATTCAAATTGGGTA 429 501 238 Antisense
GTTGCACAATCCAATGGCAGTCACT 489 439 327 Antisense
TGCACGTCTGCTGATATTTTCCGTG 158 577 370 Antisense
TCTGCTGATATTTTCCGTGTCCAAC 329 609 376 Antisense
TCCACTGGGATTTGTGAAACCGAAT 664 583 402 Antisense
CAGCGACGGACGAACTGCTCGTGAA 7 203 516 Antisense
Sequence Source Affymetrix Proprietary Database