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[178710_at]

Description F59C6.2 /REP_DB=WormBase Gene ID /WP=CE11458 /TR=Q93828 /GB=CAB01873.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 37      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 64.8
(3)
A 		12.7
(-3)
A 		12.3
(-3)
A 		53.8
(1.7)
A 		53
B 35.9
(0.1)
A 		64.4
(3)
A 		34.1
(-0.1)
A 		4.8
(-3)
A 		60
C 73.2
(3)
A 		56.3
(0.5)
A 		31.9
(-3)
A 		57.6
(0.7)
A 		41
avr 58
(3) 		44.5
(0.5) 		26.1
(-3) 		38.7
(-0.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 12.1
(-2.7)
A 		44.4
(-1.2)
A 		53.5
(-0.8)
A 		6.5
(-3)
A 		132.1
(3)
A 		128.8
(2.8)
P 		126
B 9.4
(-3)
A 		59
(-0.4)
A 		56
(-0.5)
A 		42.9
(-1.2)
A 		104.8
(2.1)
A 		121.8
(3)
P 		112
C 27
(-3)
A 		84.7
(0.4)
A 		30.2
(-2.8)
A 		72.8
(-0.3)
A 		50
(-1.7)
A 		129.9
(3)
M 		103
avr 16.2
(-3) 		62.7
(-0.5) 		46.6
(-1.4) 		40.7
(-1.7) 		95.6
(1.3) 		126.8
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.6
(3)
A 		2.8
(-3)
A 		3.2
(-2.9)
A 		7.9
(-1.5)
A 		21
B 11.4
(1.2)
A 		15.9
(3)
A 		7.9
(-0.2)
A 		1
(-3)
A 		15
C 24.2
(3)
A 		16.2
(-0.3)
A 		11.1
(-2.4)
A 		9.7
(-3)
A 		15
avr 19.7
(3) 		11.6
(-0.6) 		7.4
(-2.5) 		6.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 2.2
(-2.9)
A 		15.8
(-0.8)
A 		11.6
(-1.4)
A 		1.6
(-3)
A 		39.9
(3)
A 		31.4
(1.7)
P 		38
B 3.3
(-3)
A 		19.6
(-0.7)
A 		13.6
(-1.5)
A 		11.4
(-1.8)
A 		42.6
(2.6)
A 		45.4
(3)
P 		42
C 10
(-2.6)
A 		25.8
(0)
A 		7.7
(-3)
A 		14.6
(-1.8)
A 		16.2
(-1.6)
A 		43.5
(3)
M 		36
avr 5.2
(-3) 		20.4
(-0.4) 		11
(-2) 		9.2
(-2.3) 		32.9
(1.8) 		40.1
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1746
Sequence Type Exemplar sequence
Representative Public ID F59C6.2 NCBI
Target Description F59C6.2 /REP_DB=WormBase Gene ID /WP=CE11458 /TR=Q93828 /GB=CAB01873.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060352 NCBI Caenorhabditis elegans F59C6.2 (F59C6.2) mRNA, complete cds. 11/11 None
SNAP00000029123 ENSEMBL cdna:SNAP chromosome:CEL140:I:10530941:10532026:1 11/11 None
GENEFINDER00000029127 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10530941:10536405:1 11/11 None
F59C6.2 ENSEMBL cdna:known chromosome:CEL140:I:10530941:10532026:1 gene:F59C6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10530871-10531957(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59C6.2
Entrez Gene 186602 Entrez gene
SwissProt Q93828 EMBL-EBI
WormBase CE11458 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01874 Hypothetical protein F59C6.3 [Caenorhabditis elegans] ref|NP_492754.1| F59C6.3 [Caenorhabditis elegans] 1.0E-170
blast CAB01873 Hypothetical protein F59C6.2 [Caenorhabditis elegans] ref|NP_492753.1| F59C6.2 [Caenorhabditis elegans] 1.0E-147
blast CAB01873 Hypothetical protein F59C6.2 [Caenorhabditis elegans] ref|NP_492753.1| F59C6.2 [Caenorhabditis elegans] 1.0E-144
blast CAB01873 Hypothetical protein F59C6.2 [Caenorhabditis elegans] ref|NP_492753.1| F59C6.2 [Caenorhabditis elegans] 1.0E-143
blast CAE58963 Hypothetical protein CBG02234 [Caenorhabditis briggsae] 1.0E-120
blast CAE58963 Hypothetical protein CBG02234 [Caenorhabditis briggsae] 1.0E-117
blast CAE58963 Hypothetical protein CBG02234 [Caenorhabditis briggsae] 1.0E-115
blast AAA96084 Hypothetical protein C43H6.7 [Caenorhabditis elegans] ref|NP_508435.1| C43H6.7 [Caenorhabditis elegans] 3.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.7E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492753.1 3 4-23,85-107,156-178
F59C6.2 3 4-23,85-107,156-178
SNAP00000029123 3 4-23,85-107,156-178
GENEFINDER00000029127 10 4-23,85-107,156-178,285-307,311-333,340-362,382-404,451-473,508-530,551-573
Sequence
Target Sequence 
>C. ELEGANS:178710_AT
gttgtgaatccagggactcccagtgactcattttgtatcaaatgcaacaattggaaaggt
ccatcaacatctcattgtaaagcttgtgacaaatgtatctaccgtatggatcatcattgc
cctcatattggacaatgtgttggagcacacaatcagagccacttcttcctttttcttttc
tatcttcaaattgcaacgggcctctttttcttgatggctacaacgttttggatgaaatgg
atagagactcgtaaagaactaactgcaatcccggatgatcaatgctggcctccatattgt
tttaatagatattactacttgattacacgttctcaaggaaccgaagacactatggttaaa
ttcgcatttttccttttcgtaacacttcattggattatgtggggatttgttggtgtctac
gtaggaatcatttcatttggattaactatggcgatgaaaatgtttcaaaagtcggacgct
gaatctcgtaaacctttcacttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTGAATCCAGGGACTCCCAGTG 258 437 103 Antisense
GACTCCCAGTGACTCATTTTGTATC 182 375 117 Antisense
GGATCATCATTGCCCTCATATTGGA 370 511 210 Antisense
GGAGCACACAATCAGAGCCACTTCT 130 521 244 Antisense
TCCTTTTTCTTTTCTATCTTCAAAT 552 591 269 Antisense
TTCAAATTGCAACGGGCCTCTTTTT 29 685 287 Antisense
AGAACTAACTGCAATCCCGGATGAT 336 73 357 Antisense
GATGATCAATGCTGGCCTCCATATT 195 411 376 Antisense
TTTTCCTTTTCGTAACACTTCATTG 667 673 470 Antisense
GTGGGGATTTGTTGGTGTCTACGTA 91 489 501 Antisense
GAATCTCGTAAACCTTTCACTTGGT 273 323 583 Antisense
Sequence Source Affymetrix Proprietary Database