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[178709_at]

Description C50B6.5 /REP_DB=WormBase Gene ID /WP=CE08874 /TR=P91980 /GB=CAB02854.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 13      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 44.9
(3)
A 		22.3
(-3)
A 		39.9
(1.7)
A 		44.2
(2.8)
A 		23
B 28
(0)
A 		5.1
(-3)
A 		6.6
(-2.8)
A 		50.7
(3)
A 		46
C 30.7
(0.5)
A 		30.9
(0.5)
A 		4.8
(-3)
A 		49.3
(3)
A 		45
avr 34.5
(0.4) 		19.4
(-2.6) 		17.1
(-3) 		48.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 19.4
(-0.6)
A 		18.1
(-0.8)
A 		12.7
(-1.6)
A 		3.9
(-3)
A 		43.7
(3)
A 		3.6
(-3)
A 		40
B 24.2
(-1.6)
A 		32.9
(1)
A 		39.6
(3)
A 		29
(-0.1)
A 		20.4
(-2.7)
A 		19.4
(-3)
A 		20
C 3.6
(-3)
A 		41.6
(3)
A 		18
(-0.7)
A 		27
(0.7)
A 		24.1
(0.2)
A 		6.8
(-2.5)
A 		38
avr 15.7
(-1.3) 		30.9
(3) 		23.4
(0.9) 		20
(-0.1) 		29.4
(2.6) 		9.9
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.4
(3)
A 		4.9
(-3)
A 		10.4
(-0.1)
A 		6.5
(-2.2)
A 		12
B 8.9
(1.8)
A 		1.3
(-3)
A 		1.5
(-2.9)
A 		10.8
(3)
A 		10
C 10.1
(3)
A 		8.9
(2.1)
A 		1.7
(-3)
A 		8.3
(1.7)
A 		8
avr 11.8
(3) 		5
(-2.6) 		4.5
(-3) 		8.5
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.6
(-1.7)
A 		6.4
(-0.3)
A 		2.8
(-2.1)
A 		1
(-3)
A 		13.2
(3)
A 		0.9
(-3)
A 		12
B 8.4
(-1.1)
A 		10.9
(3)
A 		9.6
(0.9)
A 		7.7
(-2.2)
A 		8.3
(-1.2)
A 		7.2
(-3)
A 		4
C 1.3
(-3)
A 		12.7
(3)
A 		4.6
(-1.3)
A 		5.4
(-0.8)
A 		7.8
(0.4)
A 		2.3
(-2.5)
A 		11
avr 4.4
(-2.2) 		10
(3) 		5.7
(-1) 		4.7
(-1.9) 		9.8
(2.8) 		3.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14278
Sequence Type Exemplar sequence
Representative Public ID C50B6.5 NCBI
Target Description C50B6.5 /REP_DB=WormBase Gene ID /WP=CE08874 /TR=P91980 /GB=CAB02854.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073900 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-18) (srh-18) mRNA, complete cds. 11/11 None
SNAP00000011266 ENSEMBL cdna:SNAP chromosome:CEL140:V:13321387:13322672:1 11/11 None
C50B6.5 ENSEMBL cdna:known chromosome:CEL140:V:13321056:13322672:1 gene:C50B6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13321055-13322672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-18
Ensembl C50B6.5
Entrez Gene 183633 Entrez gene
SwissProt P91980 EMBL-EBI
WormBase CE08874 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02854 Hypothetical protein C50B6.5 [Caenorhabditis elegans] ref|NP_506301.1| Serpentine Receptor, class H family member (srh-18) [Caenorhabditis elegans] 0.0
blast CAB02854 Hypothetical protein C50B6.5 [Caenorhabditis elegans] ref|NP_506301.1| Serpentine Receptor, class H family member (srh-18) [Caenorhabditis elegans] 1.0E-131
blast CAE62621 Hypothetical protein CBG06743 [Caenorhabditis briggsae] 1.0E-128
blast CAE60848 Hypothetical protein CBG04557 [Caenorhabditis briggsae] 1.0E-102
blast CAE62621 Hypothetical protein CBG06743 [Caenorhabditis briggsae] 3.0E-89
blast CAE60848 Hypothetical protein CBG04557 [Caenorhabditis briggsae] 2.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506301.1 6 15-34,87-109,129-151,198-220,246-268,275-297
C50B6.5 6 15-34,87-109,129-151,198-220,246-268,275-297
SNAP00000011266 5 12-34,54-76,116-138,164-186,193-215
Sequence
Target Sequence 
>C. ELEGANS:178709_AT
aattcaacatccggaagctccttggcttgtaaattgtgactcggtggttgtggctgctcc
atttacagatccaatttctatgtttaatgtagttgtttggattgttataatctttgtggc
atctacgtcaactttttcaacaacaatttatcttcaaaaacatttaagcaaatcagagca
tcattctccggcagttttgagaatgcatcgaatgcttctaatcactctatttgttcagac
agcaattcacgcagttatgttgggaatccctaactcgatgtttatttatgctgtattttt
tgaggctcgccacgagtttctggccaaaattgctttttgctgtcttacatatcatggatt
ggcttccacgatcgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAACATCCGGAAGCTCCTTGG 686 175 519 Antisense
AATTGTGACTCGGTGGTTGTGGCTG 172 179 550 Antisense
GTGGCTGCTCCATTTACAGATCCAA 457 491 568 Antisense
GGCATCTACGTCAACTTTTTCAACA 168 537 636 Antisense
AATCAGAGCATCATTCTCCGGCAGT 135 171 689 Antisense
GAATGCTTCTAATCACTCTATTTGT 374 331 728 Antisense
CACGCAGTTATGTTGGGAATCCCTA 503 199 766 Antisense
GGGAATCCCTAACTCGATGTTTATT 703 491 780 Antisense
TGCTGTATTTTTTGAGGCTCGCCAC 10 583 807 Antisense
AAAATTGCTTTTTGCTGTCTTACAT 92 135 844 Antisense
CATGGATTGGCTTCCACGATCGCAA 332 209 871 Antisense
Sequence Source Affymetrix Proprietary Database