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[178708_s_at]

Description C14A4.8 /REP_DB=WormBase Gene ID /WP=CE02149 /TR=Q17955 /GB=CAA90112.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 34.2
(-3)
A 		102
(1.7)
A 		104.9
(1.9)
A 		119.9
(3)
P 		86
B 65.5
(2.9)
A 		66.3
(3)
A 		20.2
(-3)
A 		40.5
(-0.4)
A 		46
C 60.4
(-1.4)
A 		72.4
(0.6)
A 		51.4
(-3)
A 		86
(3)
M 		35
avr 53.4
(-3) 		80.2
(2.6) 		58.8
(-1.9) 		82.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 54.5
(0.5)
A 		20.4
(-3)
A 		45.5
(-0.4)
A 		33.3
(-1.7)
A 		76.4
(2.8)
A 		78.8
(3)
A 		58
B 42.9
(-3)
A 		49.3
(-2.5)
A 		58.8
(-1.7)
A 		87.4
(0.5)
P 		118.4
(3)
M 		100.7
(1.6)
P 		76
C 41.7
(-3)
A 		91.6
(1.6)
A 		55.8
(-1.7)
A 		69.7
(-0.4)
A 		70.1
(-0.4)
A 		107.4
(3)
P 		66
avr 46.4
(-3) 		53.8
(-2.1) 		53.4
(-2.1) 		63.5
(-0.9) 		88.3
(2.1) 		95.6
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12.5
(-3)
A 		22.1
(0.9)
A 		27.4
(3)
A 		17.5
(-1)
P 		15
B 20.9
(3)
A 		16.4
(1.3)
A 		4.7
(-3)
A 		8.6
(-1.6)
A 		16
C 20
(2.2)
A 		20.8
(3)
A 		17.9
(0.2)
A 		14.5
(-3)
M 		6
avr 17.8
(1.1) 		19.8
(3) 		16.7
(0) 		13.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 10
(-2)
A 		7.3
(-3)
A 		9.9
(-2)
A 		8.4
(-2.6)
A 		23.1
(3)
A 		19.2
(1.5)
A 		16
B 14.9
(-2.9)
A 		16.4
(-2.6)
A 		14.3
(-3)
A 		23.2
(-1.4)
P 		48.1
(3)
M 		37.5
(1.1)
P 		34
C 15.5
(-2.6)
A 		28
(0.8)
A 		14.2
(-2.9)
A 		14
(-3)
A 		22.7
(-0.6)
A 		35.9
(3)
P 		22
avr 13.5
(-2.8) 		17.2
(-1.6) 		12.8
(-3) 		15.2
(-2.2) 		31.3
(3) 		30.9
(2.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178708_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3707
Sequence Type Exemplar sequence
Representative Public ID C14A4.8 NCBI
Target Description C14A4.8 /REP_DB=WormBase Gene ID /WP=CE02149 /TR=Q17955 /GB=CAA90112.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063886 NCBI Caenorhabditis elegans C14A4.8 (C14A4.8) mRNA, complete cds. 11/11 None
SNAP00000002489 ENSEMBL cdna:SNAP chromosome:CEL140:II:10597085:10598007:-1 11/11 None
GENEFINDER00000002497 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10597085:10598007:-1 11/11 None
C14A4.8 ENSEMBL cdna:known chromosome:CEL140:II:10597085:10597983:-1 gene:C14A4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10597081-10597980(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A4.8
Entrez Gene 174636 Entrez gene
SwissProt Q17955 EMBL-EBI
WormBase CE02149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90112 Hypothetical protein C14A4.8 [Caenorhabditis elegans] ref|NP_496287.1| C14A4.8 [Caenorhabditis elegans] 1.0E-132
blast CAE59421 Hypothetical protein CBG02790 [Caenorhabditis briggsae] 7.0E-46
Sequence
Target Sequence 
>C. ELEGANS:178708_S_AT
ggaaatcgcttctcaaggctgaatcgaaatttgttcagtttctgggcttgcaggagttga
cggacagggcttgtgatcacgtggagctggcgaatccaactaaaaataccatcatcttca
acatccgcacgccaacatctccgtgtttctttgtaaaacctcatgtgggaatgattgatc
ctggagggaaggccaccttgtactttacattcaaaggccgatgccatcgagttccatcgg
attactgctggatctattcaatttatcagctcgtcgttgatgagaagaccactgcgttta
tcaaggaagatgaattttcttctcaaaatttgagatctgcctggattaagcatgggagga
agcaagtcaacaacattcttcatttggcttcttcgttcaaggctggaaaaccgaagtttg
aatgtcgggatggacaccgtaaatttctggagagaaaaatttacttgaatgatttggggg
atgttgagaattccggaaagtcaaaaaccgaaaacaccaccgatatcacaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAATCGCTTCTCAAGGCTGAATC 380 527 89 Antisense
GGGCTTGCAGGAGTTGACGGACAGG 385 491 132 Antisense
GGGCTTGTGATCACGTGGAGCTGGC 411 493 155 Antisense
CCAACATCTCCGTGTTTCTTTGTAA 56 277 220 Antisense
GAAGGCCACCTTGTACTTTACATTC 546 333 276 Antisense
ATGCCATCGAGTTCCATCGGATTAC 441 41 309 Antisense
CTATTCAATTTATCAGCTCGTCGTT 505 223 342 Antisense
AGAAGACCACTGCGTTTATCAAGGA 617 51 371 Antisense
AACATTCTTCATTTGGCTTCTTCGT 151 139 460 Antisense
TTGGCTTCTTCGTTCAAGGCTGGAA 544 705 472 Antisense
CGAAAACACCACCGATATCACACCG 58 253 597 Antisense
Sequence Source Affymetrix Proprietary Database