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[178707_at]

Description C56A3.5 /REP_DB=WormBase Gene ID /WP=CE09033 /TR=Q18877 /GB=CAB01135.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 946
1 2 3 4 range
A 407.9
(-2.2)
P 		477.3
(-1.6)
P 		325
(-3)
P 		977.3
(3)
P 		652
B 426.4
(-1.7)
P 		391.8
(-2)
P 		233.2
(-3)
P 		1152.1
(3)
P 		919
C 374.3
(-1.6)
P 		206.3
(-3)
P 		289.8
(-2.3)
P 		903.3
(3)
P 		697
avr 402.9
(-2) 		358.5
(-2.4) 		282.7
(-3) 		1010.9
(3) 		728

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 482
1 2 3 4 5 6 range
A 326.6
(-3)
P 		374.4
(-2.1)
P 		342.2
(-2.7)
P 		369.4
(-2.2)
P 		580.2
(1.9)
P 		634.5
(3)
P 		308
B 413.7
(-1.2)
P 		410.2
(-1.2)
P 		268.4
(-3)
P 		456.8
(-0.6)
P 		605.2
(1.3)
P 		740.8
(3)
P 		472
C 269.9
(-2.9)
P 		403.6
(-1.2)
P 		258.5
(-3)
P 		496
(-0)
P 		497.5
(-0)
P 		740.1
(3)
P 		482
avr 336.7
(-2.3) 		396.1
(-1.5) 		289.7
(-3) 		440.7
(-0.8) 		561
(0.9) 		705.1
(3) 		415
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 148.5
(3)
P 		103.6
(-1.2)
P 		85
(-3)
P 		143.1
(2.5)
P 		64
B 136
(-0.4)
P 		96.8
(-1.7)
P 		54
(-3)
P 		245.5
(3)
P 		192
C 123.9
(1.2)
P 		59.3
(-3)
P 		101
(-0.3)
P 		152.3
(3)
P 		93
avr 136.1
(0.4) 		86.6
(-2.6) 		80
(-3) 		180.3
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 60.2
(-3)
P 		133.2
(0.8)
P 		74.5
(-2.3)
P 		93.7
(-1.3)
P 		175.1
(3)
P 		154.5
(1.9)
P 		115
B 143.9
(-0.8)
P 		136.5
(-1)
P 		65.2
(-3)
P 		121
(-1.4)
P 		245.9
(2.1)
P 		276.3
(3)
P 		211
C 100.1
(-1.9)
P 		123.2
(-1.1)
P 		65.8
(-3)
P 		99.7
(-1.9)
P 		161
(0.1)
P 		247.8
(3)
P 		182
avr 101.4
(-1.7) 		131
(-0.6) 		68.5
(-3) 		104.8
(-1.6) 		194
(1.8) 		226.2
(3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14274
Sequence Type Exemplar sequence
Representative Public ID C56A3.5 NCBI
Target Description C56A3.5 /REP_DB=WormBase Gene ID /WP=CE09033 /TR=Q18877 /GB=CAB01135.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073954 NCBI Caenorhabditis elegans C56A3.5 (C56A3.5) mRNA, complete cds. 11/11 None
SNAP00000001396 ENSEMBL cdna:SNAP chromosome:CEL140:V:13554563:13555886:1 11/11 None
GENEFINDER00000001402 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13554563:13555886:1 11/11 None
C56A3.5 ENSEMBL cdna:known chromosome:CEL140:V:13554563:13556056:1 gene:C56A3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13554562-13555886(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56A3.5
Entrez Gene 183857 Entrez gene
SwissProt Q18877 EMBL-EBI
WormBase CE09033 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01135 Hypothetical protein C56A3.5 [Caenorhabditis elegans] ref|NP_506355.1| C56A3.5 [Caenorhabditis elegans] 0.0
blast CAE62567 Hypothetical protein CBG06678 [Caenorhabditis briggsae] 1.0E-176
Sequence
Target Sequence 
>C. ELEGANS:178707_AT
aagttctagcggttcaagagctgaaattcctgggagaaacggacgctgagcaacttctcg
aagttctgccccaatcatttccacgtcttgaaacactcatctgggattggaatgtcgttg
atccagagttgaacttcgatgaacggaccaagaaagttcttgatcagcttctctttgtca
ataagcaattgaatctaggatctcttgccgtcgttgcatatacaccaaatccagaaacta
aaaccgcaatcgaatcagttgcgaggacactgaaaggaagtattaaagatgttcaactgc
accagtttgctacaaaaggattatctgatggaatggccaatttctcacttattgttgctg
gaaataatgaaaaagcgatgaaagaactcatggatatgtatatggtagatcgatctacta
tgcctccaatgggaaaattgctccgactttgcgaggaagatattgttcccatctatccag
caat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCTAGCGGTTCAAGAGCTGAA 609 155 596 Antisense
GAAACGGACGCTGAGCAACTTCTCG 92 357 631 Antisense
AGCAACTTCTCGAAGTTCTGCCCCA 81 77 644 Antisense
TTCCACGTCTTGAAACACTCATCTG 182 699 674 Antisense
GTTGAACTTCGATGAACGGACCAAG 67 435 723 Antisense
ATCTCTTGCCGTCGTTGCATATACA 327 33 795 Antisense
GATGTTCAACTGCACCAGTTTGCTA 702 407 883 Antisense
TGGAATGGCCAATTTCTCACTTATT 20 547 924 Antisense
TCGATCTACTATGCCTCCAATGGGA 620 603 1005 Antisense
TGGGAAAATTGCTCCGACTTTGCGA 402 547 1025 Antisense
ATATTGTTCCCATCTATCCAGCAAT 72 19 1055 Antisense
Sequence Source Affymetrix Proprietary Database