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[178706_s_at]

Description F14B6.1 /REP_DB=WormBase Gene ID /WP=CE17663 /TR=O62161 /GB=CAB04105.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 11      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 19.2
(-2)
A 		53.3
(0.7)
A 		5.8
(-3)
A 		83.7
(3)
A 		78
B 42
(3)
A 		9.4
(-2.2)
A 		4.6
(-3)
A 		20.9
(-0.4)
A 		37
C 4.6
(-3)
A 		6.4
(-2.9)
A 		30.7
(-0.9)
A 		80.5
(3)
A 		76
avr 21.9
(-2) 		23
(-1.8) 		13.7
(-3) 		61.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 56.2
(1)
A 		2.5
(-3)
A 		5
(-2.8)
A 		26.8
(-1.2)
A 		26
(-1.3)
A 		83.8
(3)
A 		81
B 54.3
(-0.7)
A 		7.9
(-2.8)
A 		2.4
(-3)
A 		4.7
(-2.9)
A 		21.9
(-2.2)
A 		140.4
(3)
A 		138
C 9.4
(-2.7)
A 		5.6
(-2.9)
A 		73.9
(0.1)
A 		2.3
(-3)
A 		15.7
(-2.4)
A 		142.7
(3)
A 		140
avr 40
(-1.2) 		5.3
(-3) 		27.1
(-1.9) 		11.3
(-2.7) 		21.2
(-2.2) 		122.3
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7
(0.1)
A 		11.6
(2.7)
A 		1.5
(-3)
A 		12.2
(3)
A 		11
B 13.4
(3)
A 		2.3
(-2.4)
A 		1.1
(-3)
A 		4.5
(-1.3)
A 		12
C 1.5
(-3)
A 		1.8
(-2.9)
A 		10.7
(1.6)
A 		13.6
(3)
A 		12
avr 7.3
(0.1) 		5.2
(-2.2) 		4.4
(-3) 		10.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 10.4
(-0.1)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		6.8
(-1.2)
A 		7.9
(-0.8)
A 		20.4
(3)
A 		20
B 18.9
(-0.9)
A 		2.6
(-2.8)
A 		0.6
(-3)
A 		1.2
(-2.9)
A 		8.9
(-2)
A 		52.3
(3)
A 		52
C 3.5
(-2.6)
A 		1.7
(-2.8)
A 		18.8
(-0.7)
A 		0.5
(-3)
A 		5.1
(-2.4)
A 		47.8
(3)
A 		47
avr 10.9
(-1.6) 		1.7
(-3) 		6.8
(-2.2) 		2.8
(-2.8) 		7.3
(-2.1) 		40.2
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178706_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1118
Sequence Type Exemplar sequence
Representative Public ID F14B6.1 NCBI
Target Description F14B6.1 /REP_DB=WormBase Gene ID /WP=CE17663 /TR=O62161 /GB=CAB04105.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060683 NCBI Caenorhabditis elegans F14B6.1 (F14B6.1) mRNA, complete cds. 11/11 None
SNAP00000017556 ENSEMBL cdna:SNAP chromosome:CEL140:I:12224626:12225848:-1 11/11 None
GENEFINDER00000017565 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12224626:12225848:-1 11/11 None
F14B6.1 ENSEMBL cdna:known chromosome:CEL140:I:12224371:12225873:-1 gene:F14B6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12224556-12225779(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-14
Ensembl F14B6.1
Entrez Gene 173101 Entrez gene
SwissProt O62161 EMBL-EBI
WormBase CE17663 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04105 Hypothetical protein F14B6.1 [Caenorhabditis elegans] ref|NP_493084.1| F14B6.1 [Caenorhabditis elegans] 1.0E-125
blast CAB04104 Hypothetical protein F14B6.3 [Caenorhabditis elegans] ref|NP_493086.1| F14B6.3 [Caenorhabditis elegans] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:178706_S_AT
acgcgagtatgccagcaattacgtgaaacggttttgattgaaattgacagtagtggaagg
gtccagccgtttgtatccattgttgaggaaggcagtaaaccatattttagtccgcatgtg
ggatgtgcagagtgtatgcaatggtgggatgtgtatggagagcaaccacacagggtggag
gaaacggaagatcaagataccgacgaaggagtcgaggaagaatcagaaatcgaagactct
gattttgatgatcaaatcaccttcgtcaagccaaccacgccagctccactttccccggag
accgagaacttcatcgaagacaaaatgaagtttcactttcaagccacagacattatcaat
gagtatttgggaaagggcacagatatgggaattgtctcaaatttgatccgtatttctcag
acctatggagttcaattgaaacaggtttctagtggaaaatcgagtatgaaggaaattgaa
gggattcttaagagcttgcaaaaagagtttgaacaggagattgaagggctcaacggagaa
atttcggaggctgaggaaaacaatgaatccgatattgacgaatcctttgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCGAGTATGCCAGCAATTACGTG 592 91 112 Antisense
GTAGTGGAAGGGTCCAGCCGTTTGT 665 453 161 Antisense
TCCAGCCGTTTGTATCCATTGTTGA 555 589 173 Antisense
GGCAGTAAACCATATTTTAGTCCGC 207 1 202 Antisense
TTAGTCCGCATGTGGGATGTGCAGA 694 665 218 Antisense
GTATGGAGAGCAACCACACAGGGTG 633 455 264 Antisense
TGATCAAATCACCTTCGTCAAGCCA 433 565 360 Antisense
CCCCGGAGACCGAGAACTTCATCGA 288 259 404 Antisense
GTTTCACTTTCAAGCCACAGACATT 627 449 441 Antisense
TGATCCGTATTTCTCAGACCTATGG 183 557 515 Antisense
TCCGATATTGACGAATCCTTTGAAT 30 593 679 Antisense
Sequence Source Affymetrix Proprietary Database