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[178705_at]

Description C03A3.1 /REP_DB=WormBase Gene ID /WP=CE05192 /TR=Q17597 /GB=CAA97775.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 80      6grp_total > 23      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 299.2
(3)
P 		177.6
(-3)
P 		209.5
(-1.4)
P 		212.8
(-1.3)
P 		122
B 239.3
(2.7)
P 		242.2
(2.9)
P 		244.2
(3)
P 		138.9
(-3)
P 		105
C 243.7
(3)
P 		231.8
(1.8)
P 		230.7
(1.7)
P 		182.2
(-3)
P 		62
avr 260.7
(3) 		217.2
(-0.2) 		228.1
(0.6) 		178
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 293.3
(3)
P 		250.4
(1.2)
P 		271.1
(2.1)
P 		261.7
(1.7)
P 		167.4
(-2.2)
P 		147.2
(-3)
P 		146
B 358.5
(3)
P 		330.4
(2.2)
P 		290.6
(1.2)
P 		253.4
(0.2)
P 		198.6
(-1.3)
P 		136.6
(-3)
P 		222
C 314.3
(1.9)
P 		355
(3)
P 		286.3
(1.2)
P 		228.5
(-0.3)
P 		125.4
(-3)
P 		145.8
(-2.5)
P 		230
avr 322
(3) 		311.9
(2.7) 		282.7
(1.7) 		247.9
(0.5) 		163.8
(-2.3) 		143.2
(-3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 108.9
(3)
P 		38.6
(-2.4)
P 		54.8
(-1.2)
P 		31.1
(-3)
P 		78
B 76.3
(3)
P 		59.8
(0.9)
P 		56.6
(0.5)
P 		29.6
(-3)
P 		47
C 80.7
(3)
P 		66.6
(1.3)
P 		80.4
(3)
P 		30.7
(-3)
P 		50
avr 88.6
(3) 		55
(-0.5) 		63.9
(0.4) 		30.5
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 54.1
(-0.9)
P 		89
(3)
P 		59
(-0.4)
P 		66.4
(0.5)
P 		50.5
(-1.3)
P 		35.8
(-3)
P 		53
B 124.7
(3)
P 		110
(1.8)
P 		70.6
(-1.4)
P 		67.1
(-1.7)
P 		80.7
(-0.6)
P 		50.9
(-3)
P 		74
C 116.5
(3)
P 		108.3
(2.4)
P 		72.9
(-0.4)
P 		45.9
(-2.6)
P 		40.6
(-3)
P 		48.8
(-2.4)
P 		76
avr 98.4
(2.6) 		102.4
(3) 		67.5
(-0.7) 		59.8
(-1.5) 		57.3
(-1.7) 		45.2
(-3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16819
Sequence Type Exemplar sequence
Representative Public ID C03A3.1 NCBI
Target Description C03A3.1 /REP_DB=WormBase Gene ID /WP=CE05192 /TR=Q17597 /GB=CAA97775.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029172(10), NM_001029173(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029172 NCBI Caenorhabditis elegans C03A3.1a (C03A3.1) mRNA, complete cds. 10/11 None
NM_001029173 NCBI Caenorhabditis elegans C03A3.1b (C03A3.1) mRNA, complete cds. 10/11 None
GENEFINDER00000041009 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11257443:11259904:1 10/11 None
C03A3.1a ENSEMBL cdna:known chromosome:CEL140:X:11257284:11259904:1 gene:C03A3.1 10/11 None
C03A3.1b ENSEMBL cdna:known chromosome:CEL140:X:11257443:11260148:1 gene:C03A3.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041004 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11257442-11258831(+) 100.0 100.0
Public Domain and Genome References
Ensembl C03A3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97775 Hypothetical protein C03A3.1a [Caenorhabditis elegans] ref|NP_001024343.1| C03A3.1a [Caenorhabditis elegans] 1.0E-180
blast CAH60746 Hypothetical protein C03A3.1b [Caenorhabditis elegans] ref|NP_001024344.1| C03A3.1b [Caenorhabditis elegans] 1.0E-167
blast CAH60746 Hypothetical protein C03A3.1b [Caenorhabditis elegans] ref|NP_001024344.1| C03A3.1b [Caenorhabditis elegans] 1.0E-163
blast CAA97775 Hypothetical protein C03A3.1a [Caenorhabditis elegans] ref|NP_001024343.1| C03A3.1a [Caenorhabditis elegans] 1.0E-163
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024343.1 7 5-24,36-53,63-85,98-120,190-212,225-247,279-301
NP_001024344.1 8 5-27,42-64,77-96,111-130,166-188,203-225,238-260,264-281
C03A3.1a 7 5-24,36-53,63-85,98-120,190-212,225-247,279-301
C03A3.1b 8 5-27,42-64,77-96,111-130,166-188,203-225,238-260,264-281
GENEFINDER00000041009 7 5-24,36-53,63-85,98-120,190-212,225-247,279-301
Sequence
Target Sequence 
>C. ELEGANS:178705_AT
gatcggttatattttctcggctaatttcctcattcatttgtctcatcttccgtttgtttg
cctacatgcacattataggaaaatctgctaaaggattggagctttcaaatcagtacctct
actgtgtggcattcaccgatggtctctggttcttgtcagaagttatccgaatgtattaca
cgacaaaaacaaaccaggacgagatcgaggcaatggtcaaacgaacaactttatgggtcg
agggaaaatgcacgttctacattgaaaatgcattctatttggacgccggattgactcttt
cttacgcaattattcacattgcctttccacaacatgtgctcagtctaatcctgaaaccgg
aaaacaaacttgattctcatcattatttatggtgtcgtttgtttggtgcattgaatttga
tgccagcagtaacatcgatgtgtgcaagattctactcgccagaaatgcaaacgagctaca
tagcaagtcgacttctggtatggcattcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGGTTATATTTTCTCGGCTAAT 272 419 296 Antisense
GCTAATTTCCTCATTCATTTGTCTC 152 303 315 Antisense
TTCCGTTTGTTTGCCTACATGCACA 400 699 343 Antisense
GTACCTCTACTGTGTGGCATTCACC 391 457 408 Antisense
TTCACCGATGGTCTCTGGTTCTTGT 486 685 427 Antisense
AATGCATTCTATTTGGACGCCGGAT 392 165 562 Antisense
GACTCTTTCTTACGCAATTATTCAC 517 373 588 Antisense
TTATTCACATTGCCTTTCCACAACA 46 679 605 Antisense
CACAACATGTGCTCAGTCTAATCCT 255 195 623 Antisense
TGTGTGCAAGATTCTACTCGCCAGA 564 555 734 Antisense
GTCGACTTCTGGTATGGCATTCAAC 261 475 782 Antisense
Sequence Source Affymetrix Proprietary Database