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[178704_s_at]

Description T05A6.1 /REP_DB=WormBase Gene ID /WP=CE03628 /TR=Q22197 /GB=CAA90667.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 51      6grp_total > 03      4grp_total > 42      6grp_highest_sub > De      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 497.8
(-3)
P 		716.7
(3)
P 		506.4
(-2.8)
P 		553.4
(-1.5)
P 		219
B 585.7
(3)
P 		527.1
(-1.7)
P 		573.7
(2)
P 		511.6
(-3)
P 		74
C 384.2
(-3)
P 		503.5
(3)
P 		493.9
(2.5)
P 		479.3
(1.8)
P 		119
avr 489.2
(-3) 		582.4
(3) 		524.7
(-0.7) 		514.8
(-1.4) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 531.3
(1.8)
P 		533
(1.9)
P 		414.9
(-3)
P 		430.2
(-2.4)
P 		560.4
(3)
P 		453.4
(-1.4)
P 		146
B 710.5
(3)
P 		603.3
(0.8)
P 		572.6
(0.2)
P 		562.5
(-0)
P 		417.6
(-3)
P 		424.1
(-2.9)
P 		293
C 457.6
(-1.1)
P 		582.4
(3)
P 		406.8
(-2.8)
P 		546.1
(1.8)
P 		432.4
(-1.9)
P 		400
(-3)
P 		182
avr 566.5
(2.7) 		572.9
(3) 		464.8
(-1.4) 		512.9
(0.6) 		470.1
(-1.2) 		425.8
(-3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 181.3
(3)
P 		155.6
(1.5)
P 		132.4
(0.1)
P 		81
(-3)
P 		100
B 186.8
(3)
P 		130.2
(-1.4)
P 		132.9
(-1.2)
P 		109
(-3)
P 		78
C 127.2
(0)
P 		144.8
(1.2)
P 		172.2
(3)
P 		80.8
(-3)
P 		91
avr 165.1
(3) 		143.5
(1.3) 		145.8
(1.5) 		90.3
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 97.9
(-2.5)
P 		189.5
(3)
P 		90.4
(-3)
P 		109.1
(-1.9)
P 		169.1
(1.8)
P 		110.4
(-1.8)
P 		99
B 247.2
(3)
P 		200.8
(0.4)
P 		139
(-3)
P 		149
(-2.4)
P 		169.7
(-1.3)
P 		158.1
(-1.9)
P 		108
C 169.6
(2.3)
P 		177.7
(3)
P 		103.5
(-3)
P 		109.8
(-2.5)
P 		139.9
(-0.1)
P 		133.9
(-0.5)
P 		74
avr 171.6
(1.6) 		189.3
(3) 		111
(-3) 		122.6
(-2.1) 		159.6
(0.7) 		134.1
(-1.2) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178704_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4615
Sequence Type Exemplar sequence
Representative Public ID T05A6.1 NCBI
Target Description T05A6.1 /REP_DB=WormBase Gene ID /WP=CE03628 /TR=Q22197 /GB=CAA90667.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063240 NCBI Caenorhabditis elegans CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-1) (cki-1) mRNA, complete cds. 11/11 A 
SNAP00000031181 ENSEMBL cdna:SNAP chromosome:CEL140:II:7811181:7811792:1 11/11 None
GENEFINDER00000031188 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7811181:7811792:1 11/11 None
T05A6.1.2 ENSEMBL cdna:known chromosome:CEL140:II:7811160:7811975:1 gene:T05A6.1 11/11 None
T05A6.1.1 ENSEMBL cdna:known chromosome:CEL140:II:7811162:7812022:1 gene:T05A6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7811177-7811789(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cki-1
Ensembl T05A6.1
Entrez Gene 174260 Entrez gene
SwissProt Q22197 EMBL-EBI
WormBase CE03628 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7050 cell cycle arrest inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4861 cyclin-dependent protein kinase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90667 Hypothetical protein T05A6.1 [Caenorhabditis elegans] ref|NP_495641.1| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-1) [Caenorhabditis elegans] gb|AAF13868.1| cyclin-dependent kinase inhibitor [Caenorhabditis elegans] sp|Q22197|CKI1_CAEEL Cyclin-dependent kinase inhibitor 1.0E-78
blast CAE67452 Hypothetical protein CBG12951 [Caenorhabditis briggsae] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003175 EMBL-EBI Cyclin-dependent kinase inhibitor 3.6E-16
Sequence
Target Sequence 
>C. ELEGANS:178704_S_AT
gcaacgctccaggactcgaatttggcttgaagatgctgttaagcgcatgcgccaggaaga
aagccagaaatggggattcgactttgaactggagactcccctcccaagctctgctggatt
cgtttatgaagttattccagagaattgtgttccggagttctacagaaccaaagttctcac
tgtcagaaccacatgctcatcgctggacatcagctcaacgactttgactccattgagctc
tccgagcacatctgataaggaggagccctcgctgatggatcccaacagctcgttcgaaga
tgaagaggaaccgaagaagtggcaattcagagagccaccaactccacggaagaccccaac
aaagcgtcagcagaagatgaccgacttcatggcagtttcccgtaagaagaattcgttgtc
tccaaacaagctgtctccggtgaatgtgatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACGCTCCAGGACTCGAATTTGG 432 313 57 Antisense
GACTTTGAACTGGAGACTCCCCTCC 482 371 136 Antisense
CAAGCTCTGCTGGATTCGTTTATGA 259 185 161 Antisense
TCAGAACCACATGCTCATCGCTGGA 638 623 239 Antisense
CGACTTTGACTCCATTGAGCTCTCC 581 251 275 Antisense
AGCTCTCCGAGCACATCTGATAAGG 88 81 292 Antisense
GATCCCAACAGCTCGTTCGAAGATG 272 417 334 Antisense
GCAATTCAGAGAGCCACCAACTCCA 162 323 378 Antisense
GATGACCGACTTCATGGCAGTTTCC 444 411 432 Antisense
CGTTGTCTCCAAACAAGCTGTCTCC 56 247 470 Antisense
AGCTGTCTCCGGTGAATGTGATCTT 454 81 485 Antisense
Sequence Source Affymetrix Proprietary Database