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[178703_at]

Description T01C3.5 /REP_DB=WormBase Gene ID /WP=CE12916 /TR=Q22057 /GB=CAB01661.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 2.6
(-3)
A 		13.1
(-0.2)
A 		5
(-2.4)
A 		25
(3)
A 		22
B 19.6
(0.6)
A 		4
(-3)
A 		5.7
(-2.6)
A 		30.1
(3)
A 		26
C 35.9
(1)
A 		2
(-3)
A 		9.8
(-2.1)
A 		52.4
(3)
A 		50
avr 19.4
(-0.3) 		6.4
(-3) 		6.8
(-2.9) 		35.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 22.3
(-1.3)
A 		6.4
(-2.7)
A 		15.8
(-1.9)
A 		3.4
(-3)
A 		60.6
(2.3)
P 		68.5
(3)
A 		65
B 3.6
(-3)
A 		8.9
(-2.6)
A 		13.8
(-2.4)
A 		2.8
(-3)
A 		61.9
(0.4)
P 		107.1
(3)
P 		104
C 1.3
(-3)
A 		10.8
(-2.4)
A 		6.2
(-2.7)
A 		10.6
(-2.5)
A 		30
(-1.3)
A 		103
(3)
P 		102
avr 9.1
(-2.8) 		8.7
(-2.8) 		11.9
(-2.6) 		5.6
(-3) 		50.8
(0.1) 		92.9
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-3)
A 		2.9
(1.3)
A 		1.3
(-2.1)
A 		3.7
(3)
A 		3
B 6.3
(2.9)
A 		1
(-3)
A 		1.3
(-2.7)
A 		6.4
(3)
A 		5
C 11.9
(3)
A 		0.6
(-3)
A 		3.4
(-1.5)
A 		8.8
(1.4)
A 		11
avr 6.4
(3) 		1.5
(-3) 		2
(-2.4) 		6.3
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.1
(-1.9)
A 		2.3
(-2.5)
A 		3.4
(-2.1)
A 		0.9
(-3)
A 		18.3
(3)
P 		16.7
(2.4)
A 		17
B 1.2
(-2.9)
A 		3
(-2.6)
A 		3.4
(-2.6)
A 		0.7
(-3)
A 		25.2
(0.8)
P 		39.9
(3)
P 		39
C 0.5
(-3)
A 		3.3
(-2.5)
A 		1.6
(-2.8)
A 		2.1
(-2.7)
A 		9.7
(-1.4)
A 		34.5
(3)
P 		34
avr 1.9
(-2.9) 		2.9
(-2.7) 		2.8
(-2.7) 		1.2
(-3) 		17.7
(0.4) 		30.4
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14271
Sequence Type Exemplar sequence
Representative Public ID T01C3.5 NCBI
Target Description T01C3.5 /REP_DB=WormBase Gene ID /WP=CE12916 /TR=Q22057 /GB=CAB01661.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074288(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074288 NCBI Caenorhabditis elegans T01C3.5 (T01C3.5) mRNA, complete cds. 9/11 None
SNAP00000022412 ENSEMBL cdna:SNAP chromosome:CEL140:V:14999183:15000700:1 9/11 None
GENEFINDER00000022424 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14999183:15001184:1 11/11 None
T01C3.5 ENSEMBL cdna:known chromosome:CEL140:V:14999177:15000749:1 gene:T01C3.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14999176-15000962(+) 92.68 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C3.5
Entrez Gene 187941 Entrez gene
SwissProt Q22057 EMBL-EBI
WormBase CE28951 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01661 Hypothetical protein T01C3.5 [Caenorhabditis elegans] ref|NP_506689.1| T01C3.5 [Caenorhabditis elegans] 1.0E-135
blast CAB01661 Hypothetical protein T01C3.5 [Caenorhabditis elegans] ref|NP_506689.1| T01C3.5 [Caenorhabditis elegans] 1.0E-133
blast CAE66340 Hypothetical protein CBG11591 [Caenorhabditis briggsae] 1.0E-37
blast CAA94791 Hypothetical protein T06E4.5 [Caenorhabditis elegans] ref|NP_505485.2| T06E4.5 [Caenorhabditis elegans] 2.0E-20
blast CAA94791 Hypothetical protein T06E4.5 [Caenorhabditis elegans] ref|NP_505485.2| T06E4.5 [Caenorhabditis elegans] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506689.1 1 184-206
T01C3.5 1 184-206
SNAP00000022412 1 181-203
GENEFINDER00000022424 1 181-203
Sequence
Target Sequence 
>C. ELEGANS:178703_AT
aaatcctgaatccagacggtcctgccattattttcaagaacaatgggaagctccagagaa
tcctaatgccgaagttgctggctttgaatggaaaagacgaagatgtgcagtttgagaatg
acaatttcccatctgcagcttacacggaagtcacctcaagtcgtgacctgttaatactgg
aatcaaagtcccgcgcttcacactcacgtaaagaatgctcggcgggcttctttcaattca
agactgaagaatcatctggcatgaatgcaattgtcatcggacttatcattgcttgcgtca
tcgcttttctggcaatcattggacaaggatacttcatgtacaagcactggaatgacaatg
atgattcggatacatcgaaaagatcaaatgaagcgtccgaaaagttgccaccaactgctg
gaagtaagatggaagatccgaaaatgaaaactttttcagagcgcaagtatttcaaatcgc
aatttatgtatcacctaaacctgcgcaaccctttttcactacgaacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCTGAATCCAGACGGTCCTGC 655 117 293 Antisense
ACGGTCCTGCCATTATTTTCAAGAA 531 95 308 Antisense
GAAGCTCCAGAGAATCCTAATGCCG 209 343 339 Antisense
AATGACAATTTCCCATCTGCAGCTT 266 165 409 Antisense
TGCAGCTTACACGGAAGTCACCTCA 378 577 426 Antisense
GGCGGGCTTCTTTCAATTCAAGACT 185 541 513 Antisense
GGACTTATCATTGCTTGCGTCATCG 224 525 571 Antisense
GTCATCGCTTTTCTGGCAATCATTG 597 467 589 Antisense
TGAAGCGTCCGAAAAGTTGCCACCA 565 573 681 Antisense
TTATGTATCACCTAAACCTGCGCAA 166 681 776 Antisense
GCAACCCTTTTTCACTACGAACAAT 521 315 797 Antisense
Sequence Source Affymetrix Proprietary Database