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[178702_at]

Description D2005.6 /REP_DB=WormBase Gene ID /WP=CE09070 /TR=Q93411 /GB=CAB02080.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 23.5
(0.3)
A 		31.6
(3)
A 		13.6
(-3)
A 		20.3
(-0.8)
A 		18
B 11.8
(3)
A 		10.5
(1.8)
A 		11.5
(2.7)
A 		5.5
(-3)
A 		6
C 6.9
(-3)
A 		16.4
(1)
A 		7.7
(-2.7)
A 		21.3
(3)
A 		14
avr 14.1
(-0.8) 		19.5
(3) 		10.9
(-3) 		15.7
(0.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 10.4
(-2.4)
A 		20.6
(-1.4)
A 		65.3
(3)
A 		13.1
(-2.2)
A 		13.5
(-2.1)
A 		4.7
(-3)
A 		61
B 32.8
(1.2)
A 		21.3
(-0.9)
A 		42.9
(3)
A 		18.5
(-1.4)
A 		9.9
(-3)
A 		33.9
(1.4)
A 		33
C 46.7
(3)
A 		16.1
(-1.3)
A 		8.8
(-2.4)
A 		4.3
(-3)
A 		7.3
(-2.6)
A 		10.4
(-2.1)
A 		42
avr 30
(1.1) 		19.3
(-1.1) 		39
(3) 		12
(-2.6) 		10.2
(-3) 		16.3
(-1.7) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 8.6
(3)
A 		6.9
(1.2)
A 		3.6
(-2.4)
A 		3
(-3)
A 		6
B 3.8
(3)
A 		2.6
(0.2)
A 		2.7
(0.5)
A 		1.2
(-3)
A 		3
C 2.3
(-3)
A 		4.7
(3)
A 		2.7
(-2)
A 		3.6
(0.3)
A 		2
avr 4.9
(3) 		4.7
(2.5) 		3
(-2) 		2.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.9
(-2.6)
A 		7.3
(-0.2)
A 		14.2
(3)
A 		3.3
(-2)
A 		4.1
(-1.6)
A 		1.1
(-3)
A 		13
B 11.4
(2.2)
A 		7.1
(-0.8)
A 		10.4
(1.5)
A 		4.9
(-2.4)
A 		4
(-3)
A 		12.6
(3)
A 		9
C 17.3
(3)
A 		4.9
(-1.5)
A 		2.2
(-2.5)
A 		0.9
(-3)
A 		2.4
(-2.5)
A 		3.5
(-2)
A 		16
avr 10.2
(3) 		6.4
(-0.2) 		8.9
(1.9) 		3
(-3) 		3.5
(-2.6) 		5.7
(-0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2483
Sequence Type Exemplar sequence
Representative Public ID D2005.6 NCBI
Target Description D2005.6 /REP_DB=WormBase Gene ID /WP=CE09070 /TR=Q93411 /GB=CAB02080.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059756 NCBI Caenorhabditis elegans D2005.6 (D2005.6) mRNA, complete cds. 11/11 None
GENEFINDER00000018873 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7794803:7801665:-1 11/11 None
D2005.6 ENSEMBL cdna:known chromosome:CEL140:I:7794803:7801665:-1 gene:D2005.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018863 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7795277-7798430(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2005.6
Entrez Gene 183936 Entrez gene
SwissProt Q93411 EMBL-EBI
WormBase CE37497 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02080 Hypothetical protein D2005.6 [Caenorhabditis elegans] ref|NP_492157.2| D2005.6 [Caenorhabditis elegans] 1.0E-127
blast CAE63746 Hypothetical protein CBG08278 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492157.2 4 285-307,320-342,352-374,394-416
D2005.6 4 285-307,320-342,352-374,394-416
GENEFINDER00000018873 4 294-316,329-351,361-383,403-425
Sequence
Target Sequence 
>C. ELEGANS:178702_AT
gaggacgtggagtgtctgctgaagcattcgatcgaagacagtttaagcaatatcatccac
agggacaacctatcaaaaagccattaccaatgtacagaaagaaacgagaacctccaccga
ttggaagatatcaagaaactgattttggaggaggtggtgctggaggaggaaatgatgcat
ttacaccttataacagaaattattatggagaagttggaccacacagaacacaacaacaac
agacgatgacattacggaggttacgacccttctatgcaccatcatataccacatatcctc
catcaacaatgcatccaaaacatgcattgaataacagaaattatccattatttgcaagac
ttgcagtgaaagctgctcaagtgatactcggagtagcagttatcggattagtgttaggac
cgatgaagggaagctcgttccatgattttgtgatacgaaccaacaccgaatggcaaggca
agactagtactaggaatcagtgtttcattttcattcttctcgcttgttctcggaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGACGTGGAGTGTCTGCTGAAGC 260 405 617 Antisense
ATATCATCCACAGGGACAACCTATC 192 21 666 Antisense
AAGAAACGAGAACCTCCACCGATTG 539 151 715 Antisense
GGACCACACAGAACACAACAACAAC 612 521 832 Antisense
TTACGGAGGTTACGACCCTTCTATG 347 455 868 Antisense
GCACCATCATATACCACATATCCTC 472 315 892 Antisense
TCCTCCATCAACAATGCATCCAAAA 567 593 912 Antisense
GAAAGCTGCTCAAGTGATACTCGGA 659 359 984 Antisense
GAAGCTCGTTCCATGATTTTGTGAT 281 343 1046 Antisense
GATACGAACCAACACCGAATGGCAA 158 349 1068 Antisense
TTCTTCTCGCTTGTTCTCGGAATAA 683 689 1130 Antisense
Sequence Source Affymetrix Proprietary Database