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[178701_at]

Description T21B6.4 /REP_DB=WormBase Gene ID /WP=CE03682 /TR=Q22632 /GB=CAA92015.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 20.9
(-2.2)
A 		40.3
(1.2)
A 		16.1
(-3)
A 		50.5
(3)
A 		34
B 3.5
(-3)
A 		30
(3)
A 		16.1
(-0.1)
A 		24.5
(1.8)
A 		27
C 11.2
(-1.9)
A 		38.6
(3)
A 		4.9
(-3)
A 		6
(-2.8)
A 		34
avr 11.9
(-3) 		36.3
(3) 		12.4
(-2.9) 		27
(0.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.5
(-3)
A 		6.4
(-1.8)
A 		7.5
(-1.5)
A 		4
(-2.6)
A 		3.6
(-2.7)
A 		22.5
(3)
A 		20
B 39.2
(3)
A 		22.8
(0.2)
M 		14.3
(-1.2)
A 		4
(-3)
A 		8.5
(-2.2)
A 		24.8
(0.5)
A 		35
C 12.2
(1.5)
A 		1.2
(-3)
A 		9
(0.2)
A 		2.1
(-2.6)
A 		12.8
(1.7)
A 		16
(3)
A 		15
avr 18
(1.9) 		10.1
(-0.7) 		10.3
(-0.7) 		3.4
(-3) 		8.3
(-1.3) 		21.1
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.6
(1.4)
A 		8.8
(3)
A 		4.2
(-3)
A 		7.4
(1.2)
A 		5
B 1.1
(-3)
A 		7.4
(3)
A 		3.7
(-0.5)
A 		5.2
(0.9)
A 		6
C 3.7
(-1.4)
A 		11.1
(3)
A 		1.7
(-2.6)
A 		1
(-3)
A 		10
avr 4.1
(-2.1) 		9.1
(3) 		3.2
(-3) 		4.5
(-1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.3
(-0.8)
A 		1.6
(-1.7)
A 		1
(-2.4)
A 		1.1
(-2.3)
A 		5.5
(3)
A 		5
B 13.6
(3)
A 		7.6
(0.1)
M 		3.5
(-1.8)
A 		1.1
(-3)
A 		3.5
(-1.8)
A 		9.2
(0.9)
A 		13
C 4.5
(1.9)
A 		0.4
(-3)
A 		2.3
(-0.7)
A 		0.4
(-3)
A 		4.1
(1.4)
A 		5.4
(3)
A 		5
avr 6.2
(2.5) 		3.4
(-0.4) 		2.5
(-1.3) 		0.8
(-3) 		2.9
(-0.9) 		6.7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17222
Sequence Type Exemplar sequence
Representative Public ID T21B6.4 NCBI
Target Description T21B6.4 /REP_DB=WormBase Gene ID /WP=CE03682 /TR=Q22632 /GB=CAA92015.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077426 NCBI Caenorhabditis elegans T21B6.4 (T21B6.4) mRNA, complete cds. 11/11 None
T21B6.4 ENSEMBL cdna:known chromosome:CEL140:X:10934618:10935032:1 gene:T21B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10934617-10935032(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21B6.4
Entrez Gene 188684 Entrez gene
SwissProt Q22632 EMBL-EBI
WormBase CE03682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92015 Hypothetical protein T21B6.4 [Caenorhabditis elegans] ref|NP_509827.1| T21B6.4 [Caenorhabditis elegans] 7.0E-64
Sequence
Target Sequence 
>C. ELEGANS:178701_AT
gatccaggtgtatgagacgtctgtcggtctgttcgaaattgcgaggagttgcgaccttgg
cacacacaacaaggatcttggcttgggtgtgtatgtctgttgcgcgaaacatttcaattt
tgaggaaaaaagcgtgaaaacgtcctttcaatgcgcggctgcagttcaaaagttaatctg
tggcagcggagcgagtaaaaaacagagtcaggacacaagcgcgaacactttaattaaatc
tcaaggtatgtcccggtctctcactctcatggggaacccaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCAGGTGTATGAGACGTCTGTC 582 415 60 Antisense
GACGTCTGTCGGTCTGTTCGAAATT 469 367 75 Antisense
TTGCGAGGAGTTGCGACCTTGGCAC 652 697 98 Antisense
AGGATCTTGGCTTGGGTGTGTATGT 201 57 131 Antisense
GGTGTGTATGTCTGTTGCGCGAAAC 306 499 145 Antisense
TGAAAACGTCCTTTCAATGCGCGGC 516 573 194 Antisense
TGCGCGGCTGCAGTTCAAAAGTTAA 384 583 211 Antisense
GTTAATCTGTGGCAGCGGAGCGAGT 466 445 231 Antisense
AGAGTCAGGACACAAGCGCGAACAC 4 69 263 Antisense
AAATCTCAAGGTATGTCCCGGTCTC 255 117 295 Antisense
TCTCACTCTCATGGGGAACCCAAAG 72 609 318 Antisense
Sequence Source Affymetrix Proprietary Database