[Home] | [Total List]

[178699_at]

Description F53F4.6 /REP_DB=WormBase Gene ID /WP=CE10964 /TR=Q20731 /GB=CAB01215.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 18      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 28.4
(-2.8)
A 		53
(0.6)
A 		27.1
(-3)
A 		69.9
(3)
A 		43
B 22
(-3)
A 		49
(1.4)
A 		31.5
(-1.5)
A 		59
(3)
A 		37
C 38.3
(-2.6)
A 		34.8
(-3)
A 		34.9
(-3)
P 		85.4
(3)
A 		51
avr 29.6
(-3) 		45.6
(-0.7) 		31.2
(-2.8) 		71.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 90.2
(3)
A 		25.9
(-3)
A 		32.1
(-2.4)
A 		30
(-2.6)
A 		33.6
(-2.3)
A 		26
(-3)
A 		64
B 63.9
(3)
A 		45.2
(1)
A 		21.6
(-1.4)
A 		6.6
(-3)
A 		26.9
(-0.9)
A 		31
(-0.4)
A 		57
C 50.3
(1.5)
P 		65.5
(3)
P 		37.8
(0.2)
A 		53.5
(1.8)
A 		27.4
(-0.9)
P 		6.5
(-3)
A 		59
avr 68.1
(3) 		45.5
(0.1) 		30.5
(-1.8) 		30
(-1.9) 		29.3
(-2) 		21.2
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 10.3
(1.4)
A 		11.5
(3)
A 		7.1
(-3)
A 		10.2
(1.2)
A 		4
B 7
(-3)
A 		12.1
(2.5)
A 		7.3
(-2.7)
A 		12.6
(3)
A 		6
C 12.7
(0.7)
A 		10
(-3)
A 		12.2
(-0)
P 		14.4
(3)
A 		4
avr 10
(-1.1) 		11.2
(0.9) 		8.9
(-3) 		12.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 16.6
(3)
A 		9.2
(-1.3)
A 		7
(-2.6)
A 		7.6
(-2.2)
A 		10.1
(-0.8)
A 		6.3
(-3)
A 		10
B 22.2
(3)
A 		15.1
(0.9)
A 		5.2
(-2)
A 		1.8
(-3)
A 		10.9
(-0.3)
A 		11.5
(-0.1)
A 		20
C 18.7
(2.6)
P 		20
(3)
P 		9.6
(-0.5)
A 		10.8
(-0.1)
A 		8.9
(-0.7)
P 		2.2
(-3)
A 		18
avr 19.2
(3) 		14.8
(0.9) 		7.3
(-2.7) 		6.7
(-3) 		10
(-1.4) 		6.7
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13756
Sequence Type Exemplar sequence
Representative Public ID F53F4.6 NCBI
Target Description F53F4.6 /REP_DB=WormBase Gene ID /WP=CE10964 /TR=Q20731 /GB=CAB01215.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073968 NCBI Caenorhabditis elegans F53F4.6 (F53F4.6) mRNA, complete cds. 11/11 None
SNAP00000012437 ENSEMBL cdna:SNAP chromosome:CEL140:V:13601657:13603574:-1 9/11 None
GENEFINDER00000012451 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13601513:13609286:-1 9/11 None
F53F4.6 ENSEMBL cdna:known chromosome:CEL140:V:13601657:13605215:-1 gene:F53F4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13601656-13605215(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53F4.6
Entrez Gene 186178 Entrez gene
SwissProt Q20731 EMBL-EBI
WormBase CE10964 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01215 Hypothetical protein F53F4.6 [Caenorhabditis elegans] ref|NP_506369.1| F53F4.6 [Caenorhabditis elegans] 0.0
blast CAB01214 Hypothetical protein F53F4.5 [Caenorhabditis elegans] ref|NP_506370.2| Flavin-containing MonoOxygenase family member (fmo-4) [Caenorhabditis elegans] emb|CAE46113.1| flavin monooxygenase [Caenorhabditis elegans] 0.0
blast CAE66281 Hypothetical protein CBG11527 [Caenorhabditis briggsae] 0.0
blast CAB01215 Hypothetical protein F53F4.6 [Caenorhabditis elegans] ref|NP_506369.1| F53F4.6 [Caenorhabditis elegans] 1.0E-137
blast CAE66282 Hypothetical protein CBG11529 [Caenorhabditis briggsae] 1.0E-113
blast CAB01215 Hypothetical protein F53F4.6 [Caenorhabditis elegans] ref|NP_506369.1| F53F4.6 [Caenorhabditis elegans] 1.0E-102
blast CAE66282 Hypothetical protein CBG11529 [Caenorhabditis briggsae] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000960 EMBL-EBI Flavin-containing monooxygenase FMO 4.4E-40
Pfam IPR000960 EMBL-EBI Flavin-containing monooxygenase FMO 3.7E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506369.1 6 9-31,51-73,155-177,217-239,284-306,339-361
F53F4.6 6 9-31,51-73,155-177,217-239,284-306,339-361
SNAP00000012437 4 73-95,145-167,180-202,251-273
GENEFINDER00000012451 5 736-758,840-862,912-934,947-969,1005-1027
Sequence
Target Sequence 
>C. ELEGANS:178699_AT
aaaacatatcccattccagatccttgccatagtctccatgattcttgttctcacagcgcc
tggagcatgcttttcaagatatctcaatgggcagtctattagtagagagatttgtcccgg
acaaaatagtattttcccaatgaatgctgaccgatggagtaatgccctccattttcaagg
aaggggtcaaaacgtatacggtcaagttgctctaatctgtataactcttgcatttggact
tataacagttggagttagctgtgtcacattggccactggaagcatcctcacttatccggc
agttggaaatggagttttctcaggttgtgctggaattcctggatgtcaaattcaatttgt
tgtcaaaggatgggcagttgcggcggcgttctacttccttggagcacttctctacgtagt
ggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACATATCCCATTCCAGATCCTT 72 131 654 Antisense
TAGTCTCCATGATTCTTGTTCTCAC 84 655 683 Antisense
GCGCCTGGAGCATGCTTTTCAAGAT 602 287 709 Antisense
ATGCTGACCGATGGAGTAATGCCCT 124 43 797 Antisense
GTAATGCCCTCCATTTTCAAGGAAG 692 461 812 Antisense
GGTCAAGTTGCTCTAATCTGTATAA 391 503 853 Antisense
TAGCTGTGTCACATTGGCCACTGGA 377 651 909 Antisense
ATCCTCACTTATCCGGCAGTTGGAA 436 37 937 Antisense
GGTTGTGCTGGAATTCCTGGATGTC 554 507 976 Antisense
CAAAGGATGGGCAGTTGCGGCGGCG 329 193 1017 Antisense
GGAGCACTTCTCTACGTAGTGGACA 181 521 1054 Antisense
Sequence Source Affymetrix Proprietary Database