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[178698_at]

Description K07G5.4 /REP_DB=WormBase Gene ID /WP=CE06132 /TR=Q21300 /GB=CAA95827.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 54.9
(1.4)
A 		60.1
(2.3)
A 		29.3
(-3)
A 		64.4
(3)
A 		35
B 91.7
(3)
A 		28
(-3)
A 		48.5
(-1.1)
A 		38.8
(-2)
A 		64
C 204.5
(3)
A 		151.4
(1.3)
A 		83.4
(-0.8)
A 		14.5
(-3)
A 		190
avr 117
(3) 		79.8
(0.1) 		53.7
(-1.9) 		39.2
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 71.9
(0.1)
A 		122.6
(3)
A 		17.2
(-3)
A 		86.3
(0.9)
A 		26.1
(-2.5)
A 		27.2
(-2.4)
A 		105
B 105.4
(3)
A 		67.6
(0.6)
A 		10.6
(-3)
A 		19.4
(-2.4)
A 		19.1
(-2.5)
A 		13.6
(-2.8)
A 		95
C 92
(2)
A 		23.8
(-2.2)
A 		108
(3)
A 		23.7
(-2.2)
A 		66
(0.4)
A 		11.2
(-3)
A 		97
avr 89.8
(3) 		71.3
(1.5) 		45.3
(-0.7) 		43.1
(-0.9) 		37.1
(-1.4) 		17.3
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 20
(3)
A 		13
(-0.4)
A 		7.7
(-3)
A 		9.4
(-2.2)
A 		12
B 29.2
(3)
A 		6.9
(-3)
A 		11.2
(-1.8)
A 		8.3
(-2.6)
A 		22
C 67.7
(3)
A 		43.5
(0.8)
A 		29.1
(-0.5)
A 		2.4
(-3)
A 		65
avr 39
(3) 		21.1
(-0.3) 		16
(-1.3) 		6.7
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 13.2
(-1.6)
A 		43.6
(3)
A 		3.7
(-3)
A 		21.9
(-0.3)
A 		7.9
(-2.4)
A 		6.6
(-2.6)
A 		40
B 36.7
(3)
A 		22.5
(0.5)
A 		2.6
(-3)
A 		5.1
(-2.6)
A 		7.7
(-2.1)
A 		5.1
(-2.6)
A 		34
C 34.1
(3)
A 		7.3
(-2.3)
A 		27.5
(1.7)
A 		4.8
(-2.8)
A 		21.4
(0.5)
A 		3.7
(-3)
A 		30
avr 28
(3) 		24.5
(2.1) 		11.3
(-1.4) 		10.6
(-1.6) 		12.3
(-1.1) 		5.1
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1651
Sequence Type Exemplar sequence
Representative Public ID K07G5.4 NCBI
Target Description K07G5.4 /REP_DB=WormBase Gene ID /WP=CE06132 /TR=Q21300 /GB=CAA95827.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059626 NCBI Caenorhabditis elegans K07G5.4 (K07G5.4) mRNA, complete cds. 11/11 None
GENEFINDER00000015330 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7175144:7176815:-1 10/11 None
K07G5.4 ENSEMBL cdna:known chromosome:CEL140:I:7175144:7176815:-1 gene:K07G5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015326 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7175074-7176746(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07G5.4
Entrez Gene 187122 Entrez gene
SwissProt Q21300 EMBL-EBI
WormBase CE06132 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95827 Hypothetical protein K07G5.4 [Caenorhabditis elegans] ref|NP_492027.1| K07G5.4 [Caenorhabditis elegans] 1.0E-150
blast CAA95827 Hypothetical protein K07G5.4 [Caenorhabditis elegans] ref|NP_492027.1| K07G5.4 [Caenorhabditis elegans] 1.0E-145
blast CAE73086 Hypothetical protein CBG20464 [Caenorhabditis briggsae] 1.0E-130
blast CAE73086 Hypothetical protein CBG20464 [Caenorhabditis briggsae] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:178698_AT
tctagttttcgttcatttccattttcttatcagttaatggaaagtgaaatggatcgactt
tttgatatgatgcaagtagatgaacaaattcccaaacctacatctacaatatattatcat
gatatttcatcatctgaagcttcgccacctccacctcgaccatccataacccgaacagaa
agtgttccacgatcaattctcaagaattcatcgtcatttgcaatttacgaagaaatttat
ggagatcatttgactccaccaccaattgatattagacctcaattgcctgttcgtccaatt
atggctttccaacagtttccgccgtgtactacatttcagccaagattaattcaaagactt
ccatcagtccgtcgccgaaagaaaatgccaagccttcaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAGTTTTCGTTCATTTCCATTTT 573 613 550 Antisense
AAATTCCCAAACCTACATCTACAAT 631 115 635 Antisense
ATTTCATCATCTGAAGCTTCGCCAC 110 17 673 Antisense
TCGACCATCCATAACCCGAACAGAA 503 601 705 Antisense
TGGAGATCATTTGACTCCACCACCA 171 549 789 Antisense
GATATTAGACCTCAATTGCCTGTTC 687 417 817 Antisense
ATTGCCTGTTCGTCCAATTATGGCT 246 7 831 Antisense
TTATGGCTTTCCAACAGTTTCCGCC 519 679 848 Antisense
TTTCCGCCGTGTACTACATTTCAGC 674 669 865 Antisense
TCAAAGACTTCCATCAGTCCGTCGC 462 629 900 Antisense
AAAGAAAATGCCAAGCCTTCACCAC 654 123 927 Antisense
Sequence Source Affymetrix Proprietary Database