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[178696_at]

Description C55A1.5 /REP_DB=WormBase Gene ID /WP=CE15737 /TR=O17716 /GB=CAB04010.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 02      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 59.9
(3)
A 		9.4
(-3)
A 		30.5
(-0.5)
A 		56.6
(2.6)
A 		51
B 21.9
(-2.3)
A 		52
(3)
A 		18.2
(-3)
A 		37.2
(0.4)
A 		34
C 8.6
(-3)
A 		10.8
(-2.9)
A 		39.4
(-1.6)
A 		140.4
(3)
A 		132
avr 30.1
(-2.3) 		24.1
(-3) 		29.4
(-2.4) 		78.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 74
(3)
A 		10.7
(-2.7)
A 		8.6
(-2.9)
A 		43.5
(0.2)
A 		14.9
(-2.3)
A 		7.6
(-3)
A 		66
B 21.8
(-2)
A 		53.9
(1)
A 		11.1
(-3)
A 		75.9
(3)
A 		43.9
(0)
A 		58.5
(1.4)
A 		65
C 41.2
(0.7)
A 		56.6
(2.5)
A 		20.3
(-1.8)
A 		60.8
(3)
A 		10.3
(-3)
A 		28.4
(-0.8)
A 		51
avr 45.7
(1.2) 		40.4
(0.5) 		13.3
(-3) 		60.1
(3) 		23
(-1.8) 		31.5
(-0.7) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 21.8
(3)
A 		2
(-3)
A 		8
(-1.2)
A 		8.3
(-1.1)
A 		20
B 7
(-1)
A 		12.8
(3)
A 		4.2
(-3)
A 		7.9
(-0.4)
A 		9
C 2.9
(-3)
A 		3.1
(-2.9)
A 		13.7
(0.1)
A 		23.7
(3)
A 		21
avr 10.6
(0.8) 		6
(-3) 		8.6
(-0.9) 		13.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.6
(3)
A 		3.8
(-2)
A 		1.9
(-3)
A 		11
(1.7)
A 		4.5
(-1.7)
A 		1.9
(-3)
A 		12
B 7.6
(-1.5)
A 		17.9
(1.8)
A 		2.7
(-3)
A 		20.1
(2.5)
A 		17.8
(1.7)
A 		21.8
(3)
A 		19
C 15.3
(2.1)
A 		17.3
(3)
A 		5.2
(-2.2)
A 		12.2
(0.8)
A 		3.3
(-3)
A 		9.5
(-0.3)
A 		14
avr 12.2
(1.8) 		13
(2.2) 		3.3
(-3) 		14.4
(3) 		8.5
(-0.2) 		11.1
(1.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14255
Sequence Type Exemplar sequence
Representative Public ID C55A1.5 NCBI
Target Description C55A1.5 /REP_DB=WormBase Gene ID /WP=CE15737 /TR=O17716 /GB=CAB04010.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074490 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-23) (str-23) mRNA, complete cds. 11/11 None
GENEFINDER00000022807 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15642262:15649062:1 11/11 None
C55A1.5 ENSEMBL cdna:known chromosome:CEL140:V:15647459:15649062:1 gene:C55A1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022797 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15647458-15649062(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-23
Ensembl C55A1.5
Entrez Gene 183826 Entrez gene
WormBase CE15737 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04010 Hypothetical protein C55A1.5 [Caenorhabditis elegans] ref|NP_506891.1| Seven TM Receptor family member (str-23) [Caenorhabditis elegans] 0.0
blast CAE66311 Hypothetical protein CBG11561 [Caenorhabditis briggsae] 1.0E-141
blast CAB05494 Hypothetical protein F22B8.3 [Caenorhabditis elegans] ref|NP_507050.1| F22B8.3 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-19
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-19
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.4E-61
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.7E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506891.1 7 23-45,57-79,104-126,147-166,214-236,261-283,293-315
C55A1.5 7 23-45,57-79,104-126,147-166,214-236,261-283,293-315
GENEFINDER00000022807 9 20-39,52-74,133-155,167-189,214-236,257-276,324-346,371-393,403-425
Sequence
Target Sequence 
>C. ELEGANS:178696_AT
ggggattatccatatactttttcgatgaaatggacgactatacggataattacatgagaa
acgaaatgtgggaacggtacgatatcaatattagccaagtcgcgaaaatggcattggttg
cttataatgatgatggctcaattcgatggtggaacgtctgttgcataattgacatgacag
ttttcatgattgtacaatattcaattgtcatctactgtgcagttgttatgtatcaaaaaa
tggaagaaaaattgcaacttgtgtctgcgtcgctgcgagaactccatcgtcaatttttca
agaccctaattatgcaaatactgtccccgacaatctgtttatttgctccagtggttttta
taatctatctcccaattttcaattttgaagtgagcattccaacggggatgtttttatgtg
cattcacactgtatcctgcattggatgcattgattataatgtacattgtcaaagactaca
gaaaatctgcaaaaagaatattgaaaatcatgatggattcgatatataaaagtttagatc
tacaaccgacccgagttgaacaaacacggacttcgtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGATTATCCATATACTTTTTCGA 73 497 488 Antisense
GATGGTGGAACGTCTGTTGCATAAT 603 407 632 Antisense
TTCAATTGTCATCTACTGTGCAGTT 383 685 687 Antisense
AATTGCAACTTGTGTCTGCGTCGCT 60 179 737 Antisense
TGTGTCTGCGTCGCTGCGAGAACTC 165 555 747 Antisense
ATTATGCAAATACTGTCCCCGACAA 242 13 796 Antisense
GTCCCCGACAATCTGTTTATTTGCT 605 475 810 Antisense
TTTATAATCTATCTCCCAATTTTCA 72 675 844 Antisense
CATTCACACTGTATCCTGCATTGGA 59 217 908 Antisense
GATCTACAACCGACCCGAGTTGAAC 82 415 1024 Antisense
GTTGAACAAACACGGACTTCGTCCA 587 437 1042 Antisense
Sequence Source Affymetrix Proprietary Database