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[178695_at] zinc finger protein

Description F53B3.6 /REP_DB=WormBase Gene ID /WP=CE04446 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_high_8_8 > 53      6grp_highest_nonorm > 21      6grp_total > 23      4grp_total > 58      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1908
1 2 3 4 range
A 675
(-1.2)
P 		1929.8
(3)
P 		1534.5
(1.7)
P 		129
(-3)
P 		1801
B 749.5
(-0.8)
P 		1939.1
(3)
P 		1681.5
(2.2)
P 		58
(-3)
A 		1881
C 669.3
(-1.1)
P 		1959.8
(3)
P 		1507.1
(1.6)
P 		52
(-3)
A 		1908
avr 697.9
(-1) 		1942.9
(3) 		1574.4
(1.8) 		79.7
(-3) 		1863

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1726
1 2 3 4 5 6 range
A 1888.4
(3)
P 		1561.2
(1.8)
P 		1448.9
(1.3)
P 		1561.5
(1.8)
P 		771.2
(-1.2)
P 		297.9
(-3)
P 		1591
B 1881.5
(3)
P 		1379.3
(1.1)
P 		1615.8
(2)
P 		1453.2
(1.4)
P 		740.2
(-1.3)
P 		295.9
(-3)
P 		1586
C 2022
(3)
P 		1361.2
(0.7)
P 		1572.9
(1.4)
P 		1367.2
(0.7)
P 		922.8
(-0.9)
P 		326.8
(-3)
P 		1695
avr 1930.6
(3) 		1433.9
(1.2) 		1545.9
(1.6) 		1460.6
(1.3) 		811.4
(-1.1) 		306.9
(-3) 		1624
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 245.8
(0.4)
P 		418.9
(3)
P 		401.1
(2.7)
P 		18.9
(-3)
P 		400
B 239
(-0.1)
P 		478.9
(3)
P 		389.6
(1.9)
P 		12.4
(-3)
A 		467
C 221.5
(-0.7)
P 		563.5
(3)
P 		525.3
(2.6)
P 		8.8
(-3)
A 		555
avr 235.4
(-0.2) 		487.1
(3) 		438.7
(2.4) 		13.4
(-3) 		474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 677
1 2 3 4 5 6 range
A 348.1
(0.4)
P 		555.2
(3)
P 		315.5
(0)
P 		396
(1)
P 		232.7
(-1)
P 		72.5
(-3)
P 		483
B 654.7
(3)
P 		459.1
(0.8)
P 		392.4
(0.1)
P 		384.9
(0)
P 		300.7
(-0.9)
P 		110.4
(-3)
P 		544
C 749.5
(3)
P 		415.3
(-0.1)
P 		400.3
(-0.3)
P 		274.9
(-1.4)
P 		298.6
(-1.2)
P 		109.4
(-3)
P 		640
avr 584.1
(3) 		476.5
(1.7) 		369.4
(0.4) 		351.9
(0.1) 		277.3
(-0.8) 		97.4
(-3) 		487
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18348
Sequence Type Exemplar sequence
Representative Public ID F53B3.6 NCBI
Target Description F53B3.6 /REP_DB=WormBase Gene ID /WP=CE04446 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076095 NCBI Caenorhabditis elegans F53B3.6 (F53B3.6) mRNA, complete cds. 11/11 None
SNAP00000011071 ENSEMBL cdna:SNAP chromosome:CEL140:X:2864443:2865464:1 11/11 None
GENEFINDER00000011075 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2864443:2865464:1 11/11 None
F53B3.6 ENSEMBL cdna:known chromosome:CEL140:X:2864310:2865464:1 gene:F53B3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2864442-2865464(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl F53B3.6
Entrez Gene 180576 Entrez gene
SwissProt Q20711 EMBL-EBI
WormBase CE04446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81406 Hypothetical protein F53B3.6 [Caenorhabditis elegans] ref|NP_508496.1| F53B3.6 [Caenorhabditis elegans] 1.0E-171
blast CAE58822 Hypothetical protein CBG02032 [Caenorhabditis briggsae] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:178695_AT
gtgacattggtcgtgatccgcagtatgacttccgttcgtcccctcaaacacgtcacagag
atgccgagccttatggatttgatgatcgtcgtccacaagcaggccaagatgtacacattc
cttataatcgagatattcaggaaccagtaagggagcctctcggaagagaccgtgactttg
ttcctagaagatcatttgatggaagaatgggtgacagtccaaaatcgtattcttcccgat
ttaaggagcaagctacgagagatcgcagagccctggaatatggtcgaggaggattcggag
atgatttcgaaagagaagagtatggagcagtgcagccatatcgtggaccacctggaggcg
tggtaagtagtggaggtggcggctaccgatcaagcagccatcaccgatctcatcacgagt
cacacggtggaggacacgagtcgtcatttggagcttcacgtggtgcaatcactcaacagc
cacaggtatatcatcaggatatgagaccggttcgaccggtgcaacaccatcgagtgcaat
gttgttgcttcaaatttgtttggccaccatggagctacgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACATTGGTCGTGATCCGCAGTA 69 481 359 Antisense
GGAACCAGTAAGGGAGCCTCTCGGA 682 527 498 Antisense
GAAGAGACCGTGACTTTGTTCCTAG 527 337 521 Antisense
GACAGTCCAAAATCGTATTCTTCCC 691 197 571 Antisense
GAGCAGTGCAGCCATATCGTGGACC 338 389 683 Antisense
TGGCGGCTACCGATCAAGCAGCCAT 451 539 735 Antisense
GATCTCATCACGAGTCACACGGTGG 523 419 764 Antisense
CACGAGTCGTCATTTGGAGCTTCAC 72 201 793 Antisense
GGAGCTTCACGTGGTGCAATCACTC 10 521 808 Antisense
GACCGGTGCAACACCATCGAGTGCA 254 379 872 Antisense
GTTTGGCCACCATGGAGCTACGAAC 536 449 916 Antisense
Sequence Source Affymetrix Proprietary Database