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[178694_at]

Description F14H8.2 /REP_DB=WormBase Gene ID /WP=CE09394 /TR=Q93482 /GB=CAB02931.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 28      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 40.5
(-1.1)
A 		87.6
(2.4)
A 		13.9
(-3)
A 		96.4
(3)
A 		83
B 55.1
(1.9)
A 		44.9
(-0.4)
A 		33.9
(-3)
A 		59.6
(3)
A 		26
C 70.1
(0.2)
A 		89.1
(3)
A 		48.8
(-3)
A 		61.5
(-1.1)
A 		40
avr 55.2
(0.3) 		73.9
(3) 		32.2
(-3) 		72.5
(2.8) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 42.6
(0.4)
A 		69.6
(3)
A 		35.7
(-0.3)
A 		65.4
(2.6)
A 		22.6
(-1.6)
A 		8
(-3)
A 		62
B 85.2
(3)
A 		41.4
(-0.2)
A 		68.9
(1.8)
A 		13.2
(-2.2)
A 		17.5
(-1.9)
A 		2.8
(-3)
A 		82
C 57.3
(2.3)
A 		63.1
(3)
A 		43.8
(0.8)
A 		11.4
(-2.9)
A 		12.5
(-2.8)
A 		10.7
(-3)
A 		52
avr 61.7
(3) 		58
(2.6) 		49.5
(1.7) 		30
(-0.5) 		17.5
(-1.9) 		7.2
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.7
(1.3)
A 		19
(3)
A 		3.6
(-3)
A 		14.1
(1.1)
A 		15
B 17.6
(3)
A 		11.1
(-1)
A 		7.9
(-3)
A 		12.7
(-0)
A 		10
C 23.2
(2.1)
A 		25.6
(3)
A 		17
(-0.4)
A 		10.4
(-3)
A 		15
avr 18.5
(2.9) 		18.6
(3) 		9.5
(-3) 		12.4
(-1.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.9
(-1.4)
A 		24.8
(3)
A 		7.8
(-1.5)
A 		16.6
(0.9)
A 		6.8
(-1.7)
A 		1.9
(-3)
A 		23
B 29.6
(3)
A 		13.8
(-0.3)
A 		16.7
(0.3)
A 		3.5
(-2.5)
A 		7.1
(-1.7)
A 		1
(-3)
A 		29
C 21.2
(3)
A 		19.2
(2.4)
A 		11.1
(-0.2)
A 		2.3
(-3)
A 		4.1
(-2.4)
A 		3.6
(-2.6)
A 		19
avr 19.6
(3) 		19.3
(2.9) 		11.9
(0.3) 		7.5
(-1.2) 		6
(-1.7) 		2.2
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12772
Sequence Type Exemplar sequence
Representative Public ID F14H8.2 NCBI
Target Description F14H8.2 /REP_DB=WormBase Gene ID /WP=CE09394 /TR=Q93482 /GB=CAB02931.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074295 NCBI Caenorhabditis elegans F14H8.2 (F14H8.2) mRNA, complete cds. 11/11 None
SNAP00000006130 ENSEMBL cdna:SNAP chromosome:CEL140:V:15021810:15022911:-1 11/11 None
GENEFINDER00000006143 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15021810:15022911:-1 11/11 None
F14H8.2 ENSEMBL cdna:known chromosome:CEL140:V:15021810:15022911:-1 gene:F14H8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15021809-15022911(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H8.2
Entrez Gene 184498 Entrez gene
SwissProt Q93482 EMBL-EBI
WormBase CE09394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02931 Hypothetical protein F14H8.2 [Caenorhabditis elegans] ref|NP_506696.1| F14H8.2 [Caenorhabditis elegans] 1.0E-179
blast CAE67926 Hypothetical protein CBG13526 [Caenorhabditis briggsae] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178694_AT
gaagcacgagcggctggaattcccattaaagataacattatgtttttaaagcttgtcata
aattctctgtccaccgaattcgaagaatttttcaccgactcttgctacgctgtcgataaa
catgttcaacaacgcaaaaagtacgctttggacgcattcgattcactgaaagatctggaa
aaagaggttgacagagatgaaaaaagtgatgctaaagatttcgaagaagccacagacaaa
gccgagattgtaattcaacaaatcgaagagcttttcaatcaatacaaccgtacatggaaa
agcgtcttattggatatgaaaccaaaaagaattgatacaactctatggtgtggtgaagtt
tctcttgatgttccagggattccacacagaccacctgtctttctagttgtggctgaacat
catctagaagagagaaaaaggccaacaaaatcttcgaagacggctccagtgaagaatgaa
gatgtagaaactgttccaagttcactggctggtacctcccgtacgcccattgcgattttt
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCACGAGCGGCTGGAATTCCCA 240 341 379 Antisense
GCTTGTCATAAATTCTCTGTCCACC 467 307 429 Antisense
GAAGAATTTTTCACCGACTCTTGCT 368 339 460 Antisense
GACTCTTGCTACGCTGTCGATAAAC 693 373 475 Antisense
GTACGCTTTGGACGCATTCGATTCA 101 459 519 Antisense
GTGAAGTTTCTCTTGATGTTCCAGG 579 481 731 Antisense
TGTTCCAGGGATTCCACACAGACCA 654 561 747 Antisense
ACACAGACCACCTGTCTTTCTAGTT 228 109 762 Antisense
AAATCTTCGAAGACGGCTCCAGTGA 257 117 826 Antisense
GTTCCAAGTTCACTGGCTGGTACCT 323 439 871 Antisense
CCCGTACGCCCATTGCGATTTTTGT 172 261 896 Antisense
Sequence Source Affymetrix Proprietary Database