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[178693_at]

Description M151.3 /REP_DB=WormBase Gene ID /WP=CE12438 /TR=O17118 /GB=AAB70373.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 15.5
(-1.8)
A 		57.5
(3)
A 		6.2
(-2.8)
A 		4.5
(-3)
A 		53
B 39.7
(1)
A 		52.3
(3)
A 		34.3
(0.1)
A 		15.4
(-3)
A 		37
C 6
(-3)
A 		13.6
(-2)
A 		19.9
(-1.3)
A 		53.8
(3)
A 		48
avr 20.4
(-2.9) 		41.1
(3) 		20.1
(-3) 		24.6
(-1.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 15.1
(-0.7)
A 		28.2
(2.5)
A 		5.4
(-3)
A 		30.2
(3)
A 		14.2
(-0.9)
A 		11.9
(-1.4)
A 		25
B 14.8
(-2.3)
A 		30.9
(-0.2)
A 		56.5
(3)
A 		9.2
(-3)
A 		54.7
(2.8)
A 		10.9
(-2.8)
A 		47
C 42.1
(0.4)
A 		23.6
(-1.5)
A 		10.2
(-2.9)
A 		22.8
(-1.6)
A 		9.7
(-3)
A 		67.1
(3)
A 		57
avr 24
(-0.9) 		27.6
(1.5) 		24
(-0.9) 		20.7
(-3) 		26.2
(0.5) 		30
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.6
(-0.5)
A 		12.5
(3)
A 		1.6
(-2.5)
A 		0.7
(-3)
A 		12
B 12.7
(2.9)
A 		12.9
(3)
A 		7.9
(-0.1)
A 		3.3
(-3)
A 		10
C 2
(-3)
A 		3.9
(-1.4)
A 		6.9
(1.1)
A 		9.1
(3)
A 		7
avr 6.8
(-0.3) 		9.8
(3) 		5.5
(-1.8) 		4.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.8
(-1.9)
A 		10
(3)
A 		1.2
(-3)
A 		7.7
(1.4)
A 		4.3
(-0.9)
A 		2.9
(-1.8)
A 		9
B 5.1
(-2.2)
A 		10.3
(-0.6)
A 		13.7
(0.4)
A 		2.4
(-3)
A 		22.2
(3)
A 		4.1
(-2.5)
A 		20
C 15.6
(0.9)
A 		7.2
(-1.6)
A 		2.6
(-3)
A 		4.6
(-2.4)
A 		3.1
(-2.8)
A 		22.5
(3)
A 		20
avr 7.8
(0.5) 		9.2
(2.2) 		5.8
(-1.9) 		4.9
(-3) 		9.9
(3) 		9.8
(2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4138
Sequence Type Exemplar sequence
Representative Public ID M151.3 NCBI
Target Description M151.3 /REP_DB=WormBase Gene ID /WP=CE12438 /TR=O17118 /GB=AAB70373.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062198 NCBI Caenorhabditis elegans M151.3 (M151.3) mRNA, complete cds. 11/11 None
GENEFINDER00000044227 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3627192:3634684:1 9/11 None
M151.3 ENSEMBL cdna:known chromosome:CEL140:II:3627192:3630854:1 gene:M151.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044217 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3627190-3630853(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M151.3
Entrez Gene 187480 Entrez gene
SwissProt O17118 EMBL-EBI
WormBase CE12438 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494599 M151.3 [Caenorhabditis elegans] gb|AAB70373.1| Hypothetical protein M151.3 [Caenorhabditis elegans] 0.0
blast NP_494600 M151.2 [Caenorhabditis elegans] gb|AAB70374.1| Hypothetical protein M151.2 [Caenorhabditis elegans] 0.0
blast T32297 hypothetical protein M151.4 - Caenorhabditis elegans 1.0E-149
blast T32297 hypothetical protein M151.4 - Caenorhabditis elegans 1.0E-126
blast NP_494597 M151.7 [Caenorhabditis elegans] gb|AAK77624.1| Hypothetical protein M151.7 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 1.89999997615814
Sequence
Target Sequence 
>C. ELEGANS:178693_AT
tccaccacctttggaactcgagcagccagagccagctagagccttgctcaagtctgcccc
aaaaagctatgagcagcttacagcggagaattcagcaatgaaattggagctcgcatttct
caagagagaacttgagcagaaggatgacaaaattctggtggttgtagcagaaaatgtgat
tctcagagaggagtgggatgcgaacattgctatcaaacaggacttgagagctaagctgaa
tgatcttgaggacaagttcgcgcaaaaatcgaaggaactggctgcctccaactcgaacat
cgctcgacttgaacggaaaaacgagaagctcaaatcacccagccacactcccaaagaatt
cggacacctccagtgtacaccggatctccgaaagttcttcccagaaaaagttgaactcga
agcccgtaagagcccgaaaagatctagaggaggcggcggaagaggacgcggagccagccg
agccaaacgaggaagagccatcgtccccacctatgatatgattttggaggctcacagcaa
gctttatgtatgttttgacctatattttttgacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCACCTTTGGAACTCGAGCAG 458 589 1917 Antisense
GCTATGAGCAGCTTACAGCGGAGAA 121 303 1982 Antisense
GAGAGCTAAGCTGAATGATCTTGAG 253 395 2142 Antisense
AAATCGAAGGAACTGGCTGCCTCCA 572 117 2182 Antisense
AACGAGAAGCTCAAATCACCCAGCC 276 145 2236 Antisense
CCAGCCACACTCCCAAAGAATTCGG 290 273 2255 Antisense
CACTCCCAAAGAATTCGGACACCTC 638 195 2262 Antisense
TCCAGTGTACACCGGATCTCCGAAA 139 591 2285 Antisense
TACACCGGATCTCCGAAAGTTCTTC 46 631 2292 Antisense
GGCTCACAGCAAGCTTTATGTATGT 422 539 2445 Antisense
GTTTTGACCTATATTTTTTGACAGC 666 447 2468 Antisense
Sequence Source Affymetrix Proprietary Database