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[178692_at]

Description F54D5.2 /REP_DB=WormBase Gene ID /WP=CE20869 /TR=Q20768 /GB=CAA91329.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 35.3
(-3)
A 		56
(-2.2)
A 		72.8
(-1.5)
A 		187.5
(3)
P 		152
B 50.4
(-3)
A 		60.2
(-1.9)
A 		104.5
(3)
A 		78
(0.1)
P 		54
C 33.1
(-3)
A 		61.4
(-1.5)
A 		84.9
(-0.2)
A 		145.7
(3)
P 		113
avr 39.6
(-3) 		59.2
(-1.8) 		87.4
(-0.1) 		137.1
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 10.7
(-3)
A 		55.1
(-2.1)
A 		84.8
(-1.5)
P 		151.2
(-0.2)
P 		160.8
(-0.1)
P 		317.2
(3)
P 		307
B 20.6
(-3)
A 		26.1
(-2.9)
A 		61.9
(-2.3)
A 		70.2
(-2.2)
A 		235.6
(0.6)
P 		378.9
(3)
P 		358
C 29.4
(-3)
A 		35
(-2.9)
A 		88
(-2.2)
A 		161.4
(-1.2)
P 		160.4
(-1.2)
P 		464.2
(3)
P 		435
avr 20.2
(-3) 		38.7
(-2.7) 		78.2
(-2.1) 		127.6
(-1.2) 		185.6
(-0.3) 		386.8
(3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.8
(-2.8)
A 		12.2
(-3)
A 		19
(-0.3)
A 		27.5
(3)
P 		15
B 16.1
(-2.2)
A 		14.9
(-3)
A 		24.2
(3)
A 		16.6
(-1.9)
P 		9
C 11
(-3)
A 		17.7
(-0.8)
A 		29.6
(3)
A 		24.6
(1.4)
P 		19
avr 13.3
(-3) 		14.9
(-2.1) 		24.3
(3) 		22.9
(2.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 2
(-3)
A 		19.6
(-1.6)
A 		18.5
(-1.7)
P 		38.4
(-0.1)
P 		48.5
(0.7)
P 		77.2
(3)
P 		75
B 7.2
(-3)
A 		8.7
(-2.9)
A 		15
(-2.7)
A 		18.6
(-2.5)
A 		95.7
(1)
P 		141.3
(3)
P 		134
C 10.9
(-3)
A 		10.7
(-3)
A 		22.4
(-2.5)
A 		32.5
(-2.1)
P 		51.9
(-1.3)
P 		155.4
(3)
P 		145
avr 6.7
(-3) 		13
(-2.7) 		18.6
(-2.4) 		29.8
(-1.8) 		65.4
(-0) 		124.6
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2991
Sequence Type Exemplar sequence
Representative Public ID F54D5.2 NCBI
Target Description F54D5.2 /REP_DB=WormBase Gene ID /WP=CE20869 /TR=Q20768 /GB=CAA91329.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064073(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064073 NCBI Caenorhabditis elegans F54D5.2 (F54D5.2) mRNA, complete cds. 10/11 None
SNAP00000004677 ENSEMBL cdna:SNAP chromosome:CEL140:II:11573357:11574822:1 10/11 None
GENEFINDER00000004691 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11573175:11574822:1 10/11 None
F54D5.2 ENSEMBL cdna:known chromosome:CEL140:II:11573151:11574822:1 gene:F54D5.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11573171-11574819(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D5.2
Entrez Gene 174774 Entrez gene
SwissProt Q20768 EMBL-EBI
WormBase CE36491 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91329 Hypothetical protein F54D5.2 [Caenorhabditis elegans] ref|NP_496474.2| F54D5.2 [Caenorhabditis elegans] 0.0
blast CAE59472 Hypothetical protein CBG02856 [Caenorhabditis briggsae] 5.0E-81
blast CAE59472 Hypothetical protein CBG02856 [Caenorhabditis briggsae] 4.0E-69
Sequence
Target Sequence 
>C. ELEGANS:178692_AT
tggaacgttgaacaccatcgtcgccactggaagaactgctcgagccagttttgggcacaa
cgtggagtctcgagtcgacagtttggattatttatggtcacgatgcttctggctgggaca
acgtctttgcctagttggaatgcgatcgactgaagaggctccagtgtcgagtgcatatct
atactccttgtacccaccaacgttgaaggaacggaaaagaacgaattaccgagtagacgt
ggcaacgacttgtgtggcacaagtcatgatcaggctccgcgaggaagcggcaaaaatgcc
gcatgcgaactggattattgagtacacaggtcgagacaaggaatttgatccggcatttat
caagattaacgtggccccggatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAACGTTGAACACCATCGTCGCC 67 545 384 Antisense
ATCGTCGCCACTGGAAGAACTGCTC 525 33 400 Antisense
ACTGCTCGAGCCAGTTTTGGGCACA 139 99 418 Antisense
GGCACAACGTGGAGTCTCGAGTCGA 136 533 437 Antisense
ATTTATGGTCACGATGCTTCTGGCT 28 15 473 Antisense
CTGGCTGGGACAACGTCTTTGCCTA 559 241 492 Antisense
GAGGCTCCAGTGTCGAGTGCATATC 166 405 538 Antisense
GTGCATATCTATACTCCTTGTACCC 168 481 554 Antisense
GACGTGGCAACGACTTGTGTGGCAC 414 377 619 Antisense
GTGGCACAAGTCATGATCAGGCTCC 440 491 637 Antisense
TCAAGATTAACGTGGCCCCGGATAC 625 629 743 Antisense
Sequence Source Affymetrix Proprietary Database