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[178691_at]

Description K07A1.4 /REP_DB=WormBase Gene ID /WP=CE11846 /TR=O01339 /GB=CAB03166.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 35      6grp_total > 79      4grp_total > 26      6grp_high1_sub > Da      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 21.1
(-3)
A 		78.4
(1.9)
P 		49.1
(-0.6)
M 		90.7
(3)
A 		70
B 54
(-3)
P 		57.7
(-1.5)
P 		68.4
(3)
P 		61.8
(0.2)
P 		14
C 75.5
(3)
P 		61.8
(0.8)
P 		38.9
(-3)
P 		52.9
(-0.7)
P 		37
avr 50.2
(-3) 		66
(2.2) 		52.1
(-2.4) 		68.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 41
(-3)
A 		43.9
(-2.9)
P 		54.6
(-2.6)
P 		52.9
(-2.7)
P 		143
(-0.1)
P 		255
(3)
P 		214
B 64.7
(-2)
P 		30.3
(-3)
P 		48.3
(-2.5)
P 		50.7
(-2.4)
P 		157
(0.8)
P 		230.2
(3)
P 		200
C 43
(-3)
P 		78.7
(-1.9)
M 		42.2
(-3)
A 		53.8
(-2.6)
P 		106.8
(-1)
P 		236.3
(3)
P 		194
avr 49.6
(-3) 		51
(-2.9) 		48.4
(-3) 		52.5
(-2.9) 		135.6
(-0.3) 		240.5
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.7
(-3)
A 		17
(3)
P 		12.8
(0.3)
M 		13.3
(0.6)
A 		9
B 17.2
(3)
P 		14.2
(-1.5)
P 		15.8
(0.9)
P 		13.2
(-3)
P 		4
C 25
(3)
P 		17.8
(0.3)
P 		13.6
(-1.2)
P 		8.9
(-3)
P 		16
avr 16.6
(3) 		16.3
(2.6) 		14.1
(-0.1) 		11.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 7.6
(-3)
A 		15.6
(-2.1)
P 		11.9
(-2.5)
P 		13.4
(-2.4)
P 		43.2
(0.9)
P 		62.1
(3)
P 		55
B 22.5
(-2)
P 		10.1
(-3)
P 		11.7
(-2.9)
P 		13.4
(-2.7)
P 		63.8
(1.3)
P 		85.8
(3)
P 		76
C 15.9
(-2.5)
P 		24
(-1.8)
M 		10.7
(-3)
A 		10.8
(-3)
P 		34.5
(-0.9)
P 		79.1
(3)
P 		68
avr 15.3
(-2.6) 		16.6
(-2.5) 		11.4
(-3) 		12.5
(-2.9) 		47.2
(0.3) 		75.7
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2401
Sequence Type Exemplar sequence
Representative Public ID K07A1.4 NCBI
Target Description K07A1.4 /REP_DB=WormBase Gene ID /WP=CE11846 /TR=O01339 /GB=CAB03166.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060143 NCBI Caenorhabditis elegans K07A1.4 (K07A1.4) mRNA, complete cds. 11/11 None
SNAP00000041846 ENSEMBL cdna:SNAP chromosome:CEL140:I:9596843:9598037:-1 11/11 None
GENEFINDER00000041861 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9596843:9598037:-1 11/11 None
K07A1.4 ENSEMBL cdna:known chromosome:CEL140:I:9596843:9598037:-1 gene:K07A1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9596773-9597968(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.4
Entrez Gene 187081 Entrez gene
SwissProt O01339 EMBL-EBI
WormBase CE11846 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03166 Hypothetical protein K07A1.4 [Caenorhabditis elegans] ref|NP_492544.1| K07A1.4 [Caenorhabditis elegans] 1.0E-168
blast CAB03166 Hypothetical protein K07A1.4 [Caenorhabditis elegans] ref|NP_492544.1| K07A1.4 [Caenorhabditis elegans] 1.0E-157
blast CAE60168 Hypothetical protein CBG03722 [Caenorhabditis briggsae] 2.0E-52
blast CAE60168 Hypothetical protein CBG03722 [Caenorhabditis briggsae] 7.0E-46
blast CAE60777 Hypothetical protein CBG04466 [Caenorhabditis briggsae] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:178691_AT
gagaatgctccttactcataattgtaatggaaatagggaagatattggtgcctacatgta
tgttaagccactttgtccaattggtactggcttgtgtcatttcaaaatttcaagagatat
cacggatatgagaggaaaagttacgattacacataagtctttcgagagaatgtatggaac
aactgtatttctcctcttgacaactgtgatcatcgtcgtttcatctgatgataagttcat
tttcaacgtctccttcacttgtggttatcatcagagagaaagctacagctacaatgtgca
gatcttcgagagagatcattggccactaaacggcaacgacgctattacaagccaaaaaat
tggaaaagcccatccaggattatctcgattcacaatggaaggatggcaacgttcggatga
gcagttctcgaagggatatgaaccgataatacgcttgtaccatgactgtaccgagtacaa
acgtgaagctgaagtcaccctgaacattacaccgagctgtgaatttggaaaaggtgtctg
ccactataacatttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATGCTCCTTACTCATAATTGT 503 391 285 Antisense
AAGCCACTTTGTCCAATTGGTACTG 503 147 349 Antisense
ATTGGTACTGGCTTGTGTCATTTCA 129 5 364 Antisense
GAACAACTGTATTTCTCCTCTTGAC 295 353 461 Antisense
ACTGTGATCATCGTCGTTTCATCTG 212 97 487 Antisense
TAAGTTCATTTTCAACGTCTCCTTC 283 637 516 Antisense
GTCTCCTTCACTTGTGGTTATCATC 372 471 532 Antisense
AGCCCATCCAGGATTATCTCGATTC 388 83 651 Antisense
GGCAACGTTCGGATGAGCAGTTCTC 192 533 689 Antisense
TCACCCTGAACATTACACCGAGCTG 131 625 779 Antisense
GGTGTCTGCCACTATAACATTTCCA 567 499 817 Antisense
Sequence Source Affymetrix Proprietary Database